Detailed information NTG0070317

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: VCASEI_RS07050
• Genome accession: NZ_AP018680
• Coordinates: 1469450..1470874 (+)
• Length: 474 a.a.
• NCBI ID: WP_089110644.1
• Uniprot ID: -
• Organism: Vibrio casei strain DSM 22364
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1462494..1468828	1469450..1470874	flank	622

Gene organization within MGE regions

Location: 1462494..1470874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCASEI_RS07010	-	1462494..1463381 (+)	888	WP_086958505.1	site-specific integrase	-
VCASEI_RS07015	-	1463378..1464430 (+)	1053	WP_110957782.1	transposase	-
VCASEI_RS07020	-	1464687..1465247 (-)	561	WP_086963344.1	hypothetical protein	-
VCASEI_RS07030	-	1465529..1466679 (+)	1151	WP_110957783.1	IS3 family transposase	-
VCASEI_RS07035	-	1466676..1467185 (-)	510	WP_238321371.1	hypothetical protein	-
VCASEI_RS07040	-	1467271..1467678 (-)	408	WP_197709567.1	hypothetical protein	-
VCASEI_RS07050	sbcB	1469450..1470874 (+)	1425	WP_089110644.1	exodeoxyribonuclease I	Machinery gene

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54485.99 Da
• Isoelectric Point: 4.9844

>NTDB_id=70317 VCASEI_RS07050 WP_089110644.1 1469450..1470874(+) (sbcB) [Vibrio casei strain DSM 22364]
MSNDNAPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGIKPQLTVQKGLPEP
EFIRQIHEQLAKPNTTSLGYNSIRFDDEVTRYTLYRNFYDPYAWSWQNGNSRWDLLDIMRTCYALRPEGINWPENDEGFP
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKIKQAQPKLFNYLLSMRHKRKLNELVDIVNMTPLVHVSGMFGVQCSN
ISWIVPMAWHPTNNNAVITVNLAMDPTPLIELDAETLHQRMYTKRDDLAPNELPVPLKLVHLNKCPVLAPAKTLTAENAD
RIGIDRKQCLDNLAILKSHPEIREKLIAIYNIEREYAQDNNVDTQLYSGFFSPADKATIDIIRETAPEKLGTLDLSVKDA
RIEPLLFRYRARHFPWTLSETEQQKWLAHCREYYESNIEEYMLNLENLAYEYESDAAKIDILKSVYQYVESLIS

Nucleotide

• Length: 1425 bp

>NTDB_id=70317 VCASEI_RS07050 WP_089110644.1 1469450..1470874(+) (sbcB) [Vibrio casei strain DSM 22364]
ATGAGTAACGACAACGCCCCTACCTTTTTCTTTCTCGATTATGAAACATGGGGTGTTAATCCGGCAAAAGACCGACCAAG
TCAGTTTGCTGGCGTTCGTACCGATATGGATTTTAATATTATTGGCGAACCTTTGGTGATTTATTGCCAACCTCCTAGCG
ATTATCTTCCTTCTCCAGAAGCGGCATTAATCACGGGCATTAAGCCTCAACTTACCGTGCAAAAAGGGCTACCCGAACCG
GAATTTATTCGTCAGATTCATGAGCAACTCGCCAAGCCCAATACCACGTCATTAGGTTATAACAGTATTCGTTTCGATGA
TGAGGTCACTCGTTATACGCTTTATCGCAATTTTTACGATCCGTATGCCTGGTCTTGGCAAAATGGCAATTCACGCTGGG
ATTTACTGGATATTATGCGTACTTGCTATGCGCTGCGACCTGAAGGGATTAACTGGCCAGAAAATGATGAAGGCTTCCCA
AGCTTTAAATTAGAGCACCTTTCCGTTGCCAATGGCATTGAACACGCTAATGCGCATGATGCGATGGCCGATGTTATTGC
TACCATTGAACTTGCCAAAAAAATCAAGCAAGCCCAACCGAAACTGTTTAACTACTTATTAAGTATGCGCCACAAGCGTA
AACTCAATGAACTAGTCGATATTGTTAACATGACGCCACTCGTGCATGTTTCTGGCATGTTTGGTGTTCAGTGTTCCAAT
ATTAGTTGGATCGTGCCTATGGCTTGGCACCCTACCAATAACAATGCGGTAATAACCGTTAACCTGGCAATGGATCCAAC
GCCACTGATTGAGCTAGATGCTGAAACTCTACATCAACGCATGTACACCAAACGTGATGATCTCGCGCCTAATGAACTTC
CGGTTCCTCTTAAACTTGTGCATCTTAATAAGTGCCCTGTTCTCGCGCCAGCCAAAACGCTTACCGCTGAAAATGCCGAT
CGAATCGGTATTGATCGCAAACAATGTTTAGATAATCTCGCGATTTTAAAATCACATCCAGAGATAAGGGAAAAGCTCAT
CGCCATCTACAATATTGAACGGGAATATGCCCAAGATAATAATGTCGATACACAGCTATACAGTGGTTTTTTCTCACCTG
CCGATAAAGCAACGATTGATATTATTCGGGAAACCGCGCCTGAAAAATTAGGAACTTTAGATTTATCGGTAAAAGATGCT
CGCATTGAACCGTTACTCTTTCGTTATCGTGCGCGTCATTTTCCATGGACTCTCTCTGAAACCGAGCAACAAAAGTGGCT
TGCACACTGTCGAGAGTATTATGAAAGCAATATTGAAGAATACATGCTAAACCTAGAAAACTTAGCCTATGAATATGAAA
GTGATGCCGCAAAAATAGACATATTGAAATCTGTTTATCAATATGTCGAATCTTTAATCTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	73.093	99.578	0.728