Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NI375_RS13795 Genome accession   NZ_CP099956
Coordinates   3006379..3006894 (-) Length   171 a.a.
NCBI ID   WP_005382766.1    Uniprot ID   A0A2I3CBC3
Organism   Vibrio alginolyticus strain Isc15A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3001379..3011894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI375_RS13780 (NI375_13985) aroB 3002770..3003870 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  NI375_RS13785 (NI375_13990) aroK 3003903..3004421 (-) 519 WP_005381319.1 shikimate kinase AroK -
  NI375_RS13790 (NI375_13995) - 3004609..3006353 (-) 1745 Protein_2656 type IV pilus secretin PilQ -
  NI375_RS13795 (NI375_14000) pilP 3006379..3006894 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  NI375_RS13800 (NI375_14005) pilO 3006884..3007477 (-) 594 WP_308386895.1 type 4a pilus biogenesis protein PilO Machinery gene
  NI375_RS13805 (NI375_14010) pilN 3007470..3008045 (-) 576 WP_104975648.1 PilN domain-containing protein Machinery gene
  NI375_RS13810 (NI375_14015) pilM 3008029..3009045 (-) 1017 WP_005381324.1 type IV pilus biogenesis protein PilM Machinery gene
  NI375_RS13815 (NI375_14020) - 3009190..3011751 (+) 2562 WP_308386896.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19065.24 Da        Isoelectric Point: 10.4342

>NTDB_id=702945 NI375_RS13795 WP_005382766.1 3006379..3006894(-) (pilP) [Vibrio alginolyticus strain Isc15A]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=702945 NI375_RS13795 WP_005382766.1 3006379..3006894(-) (pilP) [Vibrio alginolyticus strain Isc15A]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAGTATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.795

100

0.848
  pilP Vibrio cholerae strain A1552

56.977

100

0.573