Detailed information NTG0702894

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI383_RS20455
• Genome accession: NZ_CP099955
• Coordinates: 2675158..2676027 (+)
• Length: 289 a.a.
• NCBI ID: WP_140154970.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain Isc4A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2670158..2681027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI383_RS20435 (NI383_20590)	nadC	2670557..2671444 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NI383_RS20440 (NI383_20595)	-	2671707..2672159 (+)	453	WP_029846089.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NI383_RS20445 (NI383_20600)	pilB	2672161..2673846 (+)	1686	WP_315868304.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI383_RS20450 (NI383_20605)	pilC	2673870..2675093 (+)	1224	WP_315868305.1	type II secretion system F family protein	Machinery gene
NI383_RS20455 (NI383_20610)	pilD	2675158..2676027 (+)	870	WP_140154970.1	A24 family peptidase	Machinery gene
NI383_RS20460 (NI383_20615)	coaE	2676028..2676642 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
NI383_RS20465 (NI383_20620)	zapD	2676670..2677410 (+)	741	WP_015297254.1	cell division protein ZapD	-
NI383_RS20470 (NI383_20625)	yacG	2677479..2677673 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
NI383_RS20475 (NI383_20630)	rplS	2678081..2678434 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
NI383_RS20480 (NI383_20635)	trmD	2678476..2679219 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NI383_RS20485 (NI383_20640)	rimM	2679247..2679795 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
NI383_RS20490 (NI383_20645)	rpsP	2679824..2680072 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32404.50 Da
• Isoelectric Point: 7.5706

>NTDB_id=702894 NI383_RS20455 WP_140154970.1 2675158..2676027(+) (pilD) [Vibrio parahaemolyticus strain Isc4A]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQNAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=702894 NI383_RS20455 WP_140154970.1 2675158..2676027(+) (pilD) [Vibrio parahaemolyticus strain Isc4A]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAAACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45