Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP76_RS25685 Genome accession   NZ_CP115297
Coordinates   5459903..5460928 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5454903..5465928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS25660 (PCP76_25635) aroE 5455105..5455929 (-) 825 WP_033978595.1 shikimate dehydrogenase -
  PCP76_RS25665 (PCP76_25640) hemF 5455987..5456904 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP76_RS25670 (PCP76_25645) - 5457095..5458072 (+) 978 WP_033978596.1 NADPH:quinone reductase -
  PCP76_RS25675 (PCP76_25650) - 5458082..5458639 (-) 558 WP_033968205.1 L-threonylcarbamoyladenylate synthase -
  PCP76_RS25680 (PCP76_25655) dprA 5458680..5459768 (-) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  PCP76_RS25685 (PCP76_25660) tsaP 5459903..5460928 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP76_RS25690 (PCP76_25665) def 5461067..5461573 (+) 507 WP_003107059.1 peptide deformylase -
  PCP76_RS25695 (PCP76_25670) fmt 5461628..5462572 (+) 945 WP_073648829.1 methionyl-tRNA formyltransferase -
  PCP76_RS25700 (PCP76_25675) rsmB 5462569..5463873 (+) 1305 WP_073648830.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP76_RS25705 (PCP76_25680) trkA 5463901..5465274 (+) 1374 WP_003107053.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=702845 PCP76_RS25685 WP_003097294.1 5459903..5460928(-) (tsaP) [Pseudomonas aeruginosa strain 135]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=702845 PCP76_RS25685 WP_003097294.1 5459903..5460928(-) (tsaP) [Pseudomonas aeruginosa strain 135]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCTCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAACTG
AGCTACGCTCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393