Detailed information NTG0702845

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI391_RS12235
• Genome accession: NZ_CP099951
• Coordinates: 2700485..2701354 (+)
• Length: 289 a.a.
• NCBI ID: WP_064354291.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain Isc25B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2695485..2706354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI391_RS12215 (NI391_12225)	nadC	2695889..2696776 (+)	888	WP_064354288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NI391_RS12220 (NI391_12230)	-	2697038..2697481 (+)	444	WP_064354289.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NI391_RS12225 (NI391_12235)	pilB	2697488..2699173 (+)	1686	WP_064354290.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI391_RS12230 (NI391_12240)	pilC	2699197..2700420 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
NI391_RS12235 (NI391_12245)	pilD	2700485..2701354 (+)	870	WP_064354291.1	A24 family peptidase	Machinery gene
NI391_RS12240 (NI391_12250)	coaE	2701355..2701969 (+)	615	WP_064354292.1	dephospho-CoA kinase	-
NI391_RS12245 (NI391_12255)	zapD	2701997..2702737 (+)	741	WP_005373086.1	cell division protein ZapD	-
NI391_RS12250 (NI391_12260)	yacG	2702896..2703090 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
NI391_RS12255 (NI391_12265)	rplS	2703574..2703927 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
NI391_RS12260 (NI391_12270)	trmD	2703969..2704730 (-)	762	WP_064354293.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NI391_RS12265 (NI391_12275)	rimM	2704758..2705306 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
NI391_RS12270 (NI391_12280)	rpsP	2705336..2705584 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.73 Da
• Isoelectric Point: 7.0197

>NTDB_id=702845 NI391_RS12235 WP_064354291.1 2700485..2701354(+) (pilD) [Vibrio alginolyticus strain Isc25B]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=702845 NI391_RS12235 WP_064354291.1 2700485..2701354(+) (pilD) [Vibrio alginolyticus strain Isc25B]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAGGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46