Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NI391_RS12185 Genome accession   NZ_CP099951
Coordinates   2686991..2687605 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc25B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2681991..2692605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI391_RS12165 (NI391_12175) - 2682276..2683193 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  NI391_RS12170 (NI391_12180) - 2683444..2685112 (-) 1669 Protein_2374 SulP family inorganic anion transporter -
  NI391_RS12175 (NI391_12185) can 2685394..2686062 (+) 669 WP_005379996.1 carbonate dehydratase -
  NI391_RS12180 (NI391_12190) hpt 2686141..2686671 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  NI391_RS12185 (NI391_12195) opaR 2686991..2687605 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  NI391_RS12190 (NI391_12200) lpdA 2687744..2689171 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  NI391_RS12195 (NI391_12205) aceF 2689439..2691340 (-) 1902 WP_064354287.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=702842 NI391_RS12185 WP_005379994.1 2686991..2687605(+) (opaR) [Vibrio alginolyticus strain Isc25B]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=702842 NI391_RS12185 WP_005379994.1 2686991..2687605(+) (opaR) [Vibrio alginolyticus strain Isc25B]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGCTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711