Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP76_RS13080 Genome accession   NZ_CP115297
Coordinates   2818108..2818752 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain 135     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2813108..2823752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS13055 (PCP76_13040) - 2814107..2814646 (-) 540 WP_033974190.1 ProQ/FINO family protein -
  PCP76_RS13060 (PCP76_13045) - 2814737..2815309 (-) 573 Protein_2576 response regulator -
  PCP76_RS13070 (PCP76_13055) pgsA 2815687..2816247 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PCP76_RS13075 (PCP76_13060) uvrC 2816281..2818107 (-) 1827 WP_033973503.1 excinuclease ABC subunit UvrC -
  PCP76_RS13080 (PCP76_13065) letA 2818108..2818752 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PCP76_RS13085 (PCP76_13070) pqsH 2819094..2820242 (-) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PCP76_RS13090 (PCP76_13075) - 2820860..2821888 (+) 1029 WP_073648510.1 AraC family transcriptional regulator -
  PCP76_RS13095 (PCP76_13080) - 2821904..2823118 (-) 1215 WP_073648511.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=702805 PCP76_RS13080 WP_003090351.1 2818108..2818752(-) (letA) [Pseudomonas aeruginosa strain 135]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702805 PCP76_RS13080 WP_003090351.1 2818108..2818752(-) (letA) [Pseudomonas aeruginosa strain 135]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGACTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCACCGAAGACCGTGAATACCTATCGCTATCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537