Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NI392_RS20605 Genome accession   NZ_CP099950
Coordinates   2699158..2699772 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc1B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2694158..2704772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS20585 (NI392_20740) - 2694444..2695361 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  NI392_RS20590 (NI392_20745) - 2695612..2697280 (-) 1669 Protein_2425 SulP family inorganic anion transporter -
  NI392_RS20595 (NI392_20750) can 2697562..2698230 (+) 669 WP_005379996.1 carbonate dehydratase -
  NI392_RS20600 (NI392_20755) hpt 2698308..2698838 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  NI392_RS20605 (NI392_20760) opaR 2699158..2699772 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  NI392_RS20610 (NI392_20765) lpdA 2699918..2701345 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  NI392_RS20615 (NI392_20770) aceF 2701613..2703505 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=702802 NI392_RS20605 WP_005379994.1 2699158..2699772(+) (opaR) [Vibrio alginolyticus strain Isc1B]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=702802 NI392_RS20605 WP_005379994.1 2699158..2699772(+) (opaR) [Vibrio alginolyticus strain Isc1B]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTTTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAACTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711