Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   NI380_RS17215 Genome accession   NZ_CP099935
Coordinates   326694..327875 (-) Length   393 a.a.
NCBI ID   WP_029844629.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 321694..332875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS17200 (NI380_17540) - 322997..323545 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  NI380_RS17205 (NI380_17545) - 323631..324248 (-) 618 WP_025515995.1 HAD family phosphatase -
  NI380_RS17210 (NI380_17550) cqsS 324568..326616 (+) 2049 WP_024701329.1 response regulator Regulator
  NI380_RS17215 (NI380_17555) cqsA 326694..327875 (-) 1182 WP_029844629.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NI380_RS17220 (NI380_17560) ylqF 328230..329174 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  NI380_RS17225 (NI380_17565) - 329867..330721 (-) 855 WP_025795678.1 LysR family transcriptional regulator -
  NI380_RS24120 - 330829..331851 (-) 1023 WP_338429172.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43780.17 Da        Isoelectric Point: 6.7297

>NTDB_id=702749 NI380_RS17215 WP_029844629.1 326694..327875(-) (cqsA) [Vibrio parahaemolyticus strain BM26A]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=702749 NI380_RS17215 WP_029844629.1 326694..327875(-) (cqsA) [Vibrio parahaemolyticus strain BM26A]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAGCCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTCGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.915

98.473

0.58