Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   NI380_RS17210 Genome accession   NZ_CP099935
Coordinates   324568..326616 (+) Length   682 a.a.
NCBI ID   WP_024701329.1    Uniprot ID   A0A2S1MG06
Organism   Vibrio parahaemolyticus strain BM26A     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 319568..331616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS17190 (NI380_17530) dcuC 319880..321247 (-) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  NI380_RS17195 (NI380_17535) - 321601..322725 (-) 1125 WP_308386588.1 fatty acid desaturase -
  NI380_RS17200 (NI380_17540) - 322997..323545 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  NI380_RS17205 (NI380_17545) - 323631..324248 (-) 618 WP_025515995.1 HAD family phosphatase -
  NI380_RS17210 (NI380_17550) cqsS 324568..326616 (+) 2049 WP_024701329.1 response regulator Regulator
  NI380_RS17215 (NI380_17555) cqsA 326694..327875 (-) 1182 WP_029844629.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NI380_RS17220 (NI380_17560) ylqF 328230..329174 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  NI380_RS17225 (NI380_17565) - 329867..330721 (-) 855 WP_025795678.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78287.10 Da        Isoelectric Point: 5.8750

>NTDB_id=702748 NI380_RS17210 WP_024701329.1 324568..326616(+) (cqsS) [Vibrio parahaemolyticus strain BM26A]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYATVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=702748 NI380_RS17210 WP_024701329.1 324568..326616(+) (cqsS) [Vibrio parahaemolyticus strain BM26A]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTGCTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGTAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCGGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTCATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGACTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCATATTCATGTGAGTATGCAGAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGCTCAGGTATTGCGCCAGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGACTACCGTTTTGTAAGAAAGTCATGCGTTCATTTGGCGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGACGAACTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCAGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCGCAACGAGCTAAAAAAGCTGGTCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACCAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACGCTGCCATCTGCGCCTTTAGATAAA
TCCATCAAACGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCAACTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATAGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCAGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.83

100

0.49