Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NI384_RS02940 Genome accession   NZ_CP099928
Coordinates   601510..602124 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 596510..607124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS02930 (NI384_02930) aceF 597785..599686 (+) 1902 WP_140302422.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  NI384_RS02935 (NI384_02935) lpdA 599955..601382 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  NI384_RS02940 (NI384_02940) opaR 601510..602124 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  NI384_RS02945 (NI384_02945) hpt 602443..602973 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  NI384_RS02950 (NI384_02950) can 603047..603715 (-) 669 WP_005462578.1 carbonate dehydratase -
  NI384_RS02955 (NI384_02955) - 603999..605669 (+) 1671 WP_005479694.1 SulP family inorganic anion transporter -
  NI384_RS02960 (NI384_02960) - 605921..606838 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=702681 NI384_RS02940 WP_005479697.1 601510..602124(-) (opaR) [Vibrio parahaemolyticus strain BM24B]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=702681 NI384_RS02940 WP_005479697.1 601510..602124(-) (opaR) [Vibrio parahaemolyticus strain BM24B]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701