Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP18_RS01630 Genome accession   NZ_CP115295
Coordinates   335234..335599 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 199     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330234..340599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP18_RS01615 (PCP18_01615) pilK 331578..332453 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  PCP18_RS01620 (PCP18_01620) pilJ 332514..334562 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PCP18_RS01625 (PCP18_01625) - 334647..335183 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP18_RS01630 (PCP18_01630) pilH 335234..335599 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP18_RS01635 (PCP18_01635) pilG 335646..336053 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP18_RS01640 (PCP18_01640) gshB 336308..337261 (+) 954 WP_003100943.1 glutathione synthase -
  PCP18_RS01645 (PCP18_01645) - 337408..338301 (+) 894 WP_003162015.1 energy transducer TonB -
  PCP18_RS01650 (PCP18_01650) - 338350..338919 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  PCP18_RS01655 (PCP18_01655) ruvX 338919..339353 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP18_RS01660 (PCP18_01660) pyrR 339465..339977 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=702567 PCP18_RS01630 WP_003084587.1 335234..335599(-) (pilH) [Pseudomonas aeruginosa strain 199]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=702567 PCP18_RS01630 WP_003084587.1 335234..335599(-) (pilH) [Pseudomonas aeruginosa strain 199]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364