Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI388_RS14715 Genome accession   NZ_CP099919
Coordinates   3128160..3128885 (+) Length   241 a.a.
NCBI ID   WP_140383682.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc14B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3123160..3133885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI388_RS14700 (NI388_15345) - 3124264..3126585 (+) 2322 WP_308390464.1 Tex family protein -
  NI388_RS14705 (NI388_15350) - 3126720..3127184 (-) 465 WP_005459035.1 hypothetical protein -
  NI388_RS14710 (NI388_15355) bioH 3127308..3128075 (-) 768 WP_031820331.1 pimeloyl-ACP methyl ester esterase BioH -
  NI388_RS14715 (NI388_15360) comF 3128160..3128885 (+) 726 WP_140383682.1 ComF family protein Machinery gene
  NI388_RS14720 (NI388_15365) nfuA 3128983..3129567 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  NI388_RS14725 (NI388_15370) nudE 3129788..3130357 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  NI388_RS14730 (NI388_15375) cysQ 3130398..3131225 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI388_RS14735 (NI388_15380) - 3131511..3132275 (-) 765 WP_308390465.1 type II secretion system protein N -
  NI388_RS14740 (NI388_15385) - 3132277..3132768 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27703.94 Da        Isoelectric Point: 8.9991

>NTDB_id=702568 NI388_RS14715 WP_140383682.1 3128160..3128885(+) (comF) [Vibrio parahaemolyticus strain Isc14B]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702568 NI388_RS14715 WP_140383682.1 3128160..3128885(+) (comF) [Vibrio parahaemolyticus strain Isc14B]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485