Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NI388_RS03050 Genome accession   NZ_CP099919
Coordinates   628454..629068 (-) Length   204 a.a.
NCBI ID   WP_308390585.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc14B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 623454..634068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI388_RS03040 (NI388_03040) aceF 624745..626631 (+) 1887 WP_140077977.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  NI388_RS03045 (NI388_03045) lpdA 626899..628326 (+) 1428 WP_308390583.1 dihydrolipoyl dehydrogenase -
  NI388_RS03050 (NI388_03050) opaR 628454..629068 (-) 615 WP_308390585.1 transcriptional regulator OpaR Regulator
  NI388_RS03055 (NI388_03055) hpt 629386..629916 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  NI388_RS03060 (NI388_03060) can 629990..630658 (-) 669 WP_005462578.1 carbonate dehydratase -
  NI388_RS03065 (NI388_03065) - 630942..632612 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  NI388_RS03070 (NI388_03070) - 632865..633782 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23648.96 Da        Isoelectric Point: 6.0781

>NTDB_id=702554 NI388_RS03050 WP_308390585.1 628454..629068(-) (opaR) [Vibrio parahaemolyticus strain Isc14B]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEILNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=702554 NI388_RS03050 WP_308390585.1 628454..629068(-) (opaR) [Vibrio parahaemolyticus strain Isc14B]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAATTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696