Detailed information NTG0702551

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI388_RS03000
• Genome accession: NZ_CP099919
• Coordinates: 614721..615590 (-)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain Isc14B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 609721..620590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI388_RS02965 (NI388_02965)	rpsP	610648..610896 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
NI388_RS02970 (NI388_02970)	rimM	610925..611473 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
NI388_RS02975 (NI388_02975)	trmD	611501..612244 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NI388_RS02980 (NI388_02980)	rplS	612286..612639 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
NI388_RS02985 (NI388_02985)	yacG	613075..613269 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
NI388_RS02990 (NI388_02990)	zapD	613338..614078 (-)	741	WP_023624252.1	cell division protein ZapD	-
NI388_RS02995 (NI388_02995)	coaE	614106..614720 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
NI388_RS03000 (NI388_03000)	pilD	614721..615590 (-)	870	WP_025533026.1	A24 family peptidase	Machinery gene
NI388_RS03005 (NI388_03005)	pilC	615655..616878 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
NI388_RS03010 (NI388_03010)	pilB	616902..618587 (-)	1686	WP_029855968.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI388_RS03015 (NI388_03015)	-	618587..619045 (-)	459	WP_021486793.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NI388_RS03020 (NI388_03020)	nadC	619309..620196 (-)	888	WP_025638275.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=702551 NI388_RS03000 WP_025533026.1 614721..615590(-) (pilD) [Vibrio parahaemolyticus strain Isc14B]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=702551 NI388_RS03000 WP_025533026.1 614721..615590(-) (pilD) [Vibrio parahaemolyticus strain Isc14B]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGCTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45