Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   NI390_RS17635 Genome accession   NZ_CP099916
Coordinates   621653..622834 (-) Length   393 a.a.
NCBI ID   WP_222753557.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 616653..627834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS17630 (NI390_17625) cqsS 619569..621617 (+) 2049 WP_308413785.1 response regulator Regulator
  NI390_RS17635 (NI390_17630) cqsA 621653..622834 (-) 1182 WP_222753557.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NI390_RS17640 (NI390_17635) - 623053..624009 (-) 957 WP_308413786.1 TDT family transporter -
  NI390_RS17645 (NI390_17640) clcA 624174..625571 (-) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  NI390_RS17650 (NI390_17645) - 626032..627021 (+) 990 WP_032081917.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43552.51 Da        Isoelectric Point: 7.0294

>NTDB_id=702507 NI390_RS17635 WP_222753557.1 621653..622834(-) (cqsA) [Vibrio fluvialis strain Isc7A]
MKTDAKNNRLPKFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSSVTAEHIDRILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=702507 NI390_RS17635 WP_222753557.1 621653..622834(-) (cqsA) [Vibrio fluvialis strain Isc7A]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTAAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACTCATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGATTCCTGCCT
GCTGTCGCAATCGGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCGCCAGGAAGTAATGTCTATATCGACT
TCTTTGCTCATATGTCTATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATTGC
GCCGTTAGCTGAATTAGTCGCGATCGCTAAAGAGACCGGCAGCGCTATTCTCGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTACTGGCAGAGTTAGGTTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGTGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTGCCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCCGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCCACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTTCTGTCACTGCTGAACACA
TCGACCGTATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

69.87

97.964

0.684