Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   NI390_RS17630 Genome accession   NZ_CP099916
Coordinates   619569..621617 (+) Length   682 a.a.
NCBI ID   WP_308413785.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 614569..626617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS17620 (NI390_17615) - 615243..616385 (+) 1143 WP_308413783.1 exonuclease SbcCD subunit D -
  NI390_RS17625 (NI390_17620) - 616389..619430 (+) 3042 WP_308413784.1 SMC family ATPase -
  NI390_RS17630 (NI390_17625) cqsS 619569..621617 (+) 2049 WP_308413785.1 response regulator Regulator
  NI390_RS17635 (NI390_17630) cqsA 621653..622834 (-) 1182 WP_222753557.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NI390_RS17640 (NI390_17635) - 623053..624009 (-) 957 WP_308413786.1 TDT family transporter -
  NI390_RS17645 (NI390_17640) clcA 624174..625571 (-) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79221.89 Da        Isoelectric Point: 5.3014

>NTDB_id=702506 NI390_RS17630 WP_308413785.1 619569..621617(+) (cqsS) [Vibrio fluvialis strain Isc7A]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVMPLDIRQMLRDTDKELDKLFFDVAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=702506 NI390_RS17630 WP_308413785.1 619569..621617(+) (cqsS) [Vibrio fluvialis strain Isc7A]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGCATCGCGTTTCGTAATTCCGTGCCCAAATTATGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTCTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCTTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GCGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTATATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGGAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGAGCGGG
CATCGCGCATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ATAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGTGAAGTCGTTGACTACGCGTTGCATTCGTTCTCCTATAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGAGGACGACTTCGACTATTTTGGCAGTGATACGCTGTTGAAATTTGCACTGTATAACTTGCTGAAAAACGCC
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTCACCCTGAAAACCCAGGGCAATCAAAACCTCATCGTGGTCAA
AGATAATGGCGTAGGCATTGCGCCGGATCGCATCGACGATATTTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCGTCTGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAAGGATTAATGAGTCGCCATTTAAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATCGAGCGCCATTTACGCGTAATGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATGTCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACCGCGTTGATGCTAGAAAAACAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTGATCCTGATGG
ATATCGAAATGCCGTTTATCGATGGCATAGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCATATTCCT
ATTGTCGGGCATACGGGCGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAACTGGCAAACTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591