Detailed information NTG0702500

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: NI390_RS13210
• Genome accession: NZ_CP099915
• Coordinates: 2809552..2810556 (-)
• Length: 334 a.a.
• NCBI ID: WP_308413239.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain Isc7A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2804552..2815556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI390_RS13185 (NI390_13180)	aroK	2805420..2805938 (-)	519	WP_004728569.1	shikimate kinase AroK	-
NI390_RS13190 (NI390_13185)	pilQ	2806126..2807862 (-)	1737	WP_024374092.1	type IV pilus secretin PilQ	Machinery gene
NI390_RS13195 (NI390_13190)	pilP	2807887..2808399 (-)	513	WP_308413238.1	pilus assembly protein PilP	Machinery gene
NI390_RS13200 (NI390_13195)	pilO	2808389..2808979 (-)	591	WP_020429291.1	type 4a pilus biogenesis protein PilO	Machinery gene
NI390_RS13205 (NI390_13200)	pilN	2808972..2809562 (-)	591	WP_024374094.1	PilN domain-containing protein	Machinery gene
NI390_RS13210 (NI390_13205)	pilM	2809552..2810556 (-)	1005	WP_308413239.1	type IV pilus assembly protein PilM	Machinery gene
NI390_RS13215 (NI390_13210)	-	2810699..2813179 (+)	2481	WP_308413240.1	PBP1A family penicillin-binding protein	-
NI390_RS13220 (NI390_13215)	oxyR	2813240..2814136 (-)	897	WP_020329438.1	DNA-binding transcriptional regulator OxyR	-
NI390_RS13225 (NI390_13220)	-	2814280..2815014 (+)	735	WP_020329437.1	glutathione peroxidase	-
NI390_RS13230 (NI390_13225)	-	2815144..2815407 (+)	264	WP_020429299.1	DUF3624 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36817.12 Da
• Isoelectric Point: 6.6961

>NTDB_id=702500 NI390_RS13210 WP_308413239.1 2809552..2810556(-) (pilM) [Vibrio fluvialis strain Isc7A]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFVVTGEKTLGRSSSLTYQVYATRREVIDNRLSAVSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDVGFSQTSLCIDFADKTPFYKDIPLGTRQLVAATSGGNADLTSPQAHFIQE
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLALPCELFNPLAEFTCRASLRRQPQADLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide

• Length: 1005 bp

>NTDB_id=702500 NI390_RS13210 WP_308413239.1 2809552..2810556(-) (pilM) [Vibrio fluvialis strain Isc7A]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
GTATTCGCTGGTCGGTTACCAAGAGATAGTCGTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCTCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGTTGTCACCGGAGAAAAAACACTGGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGGTGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGTCTGCTCAATATCTGGCAATGGGTCAGCCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTTGATGTCGGGTTCAGTCAAACCTCATTGTGCATCGACTTTGCCGATAAAACGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGGTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAG
TTGGTTGAGCGTCTGGCGCGCCAGATCCAGCTGTTTCTTTCTCTGCAAGGCCATCAACCGCTGGCCGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGCTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGCTACGCCGCCAGCCTCAGGCTGATTTGCAGCGTTTCAGTACTGCGGCCGGCTTG
GCGCTGCGCGGCCTGAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (237-324)

• Type IV pilus assembly protein PilM; (PilM_2) (8-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	65.68	100	0.665
pilM	Vibrio campbellii strain DS40M4	48.406	100	0.5