Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NI390_RS12095 Genome accession   NZ_CP099915
Coordinates   2582616..2583233 (+) Length   205 a.a.
NCBI ID   WP_024374317.1    Uniprot ID   M1KD28
Organism   Vibrio fluvialis strain Isc7A     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577616..2588233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS12070 (NI390_12065) panC 2578076..2578957 (+) 882 WP_020331996.1 pantoate--beta-alanine ligase -
  NI390_RS12075 (NI390_12070) - 2579016..2579784 (-) 769 Protein_2296 ABC transporter permease -
  NI390_RS12080 (NI390_12075) - 2579789..2580706 (-) 918 WP_020331993.1 ABC transporter ATP-binding protein -
  NI390_RS12085 (NI390_12080) can 2581050..2581718 (+) 669 WP_020331992.1 carbonate dehydratase -
  NI390_RS12090 (NI390_12085) hpt 2581768..2582295 (-) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  NI390_RS12095 (NI390_12090) opaR 2582616..2583233 (+) 618 WP_024374317.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  NI390_RS12100 (NI390_12095) lpdA 2583355..2584782 (-) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  NI390_RS12105 (NI390_12100) aceF 2585041..2586936 (-) 1896 WP_020430458.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23890.30 Da        Isoelectric Point: 6.2346

>NTDB_id=702491 NI390_RS12095 WP_024374317.1 2582616..2583233(+) (opaR) [Vibrio fluvialis strain Isc7A]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=702491 NI390_RS12095 WP_024374317.1 2582616..2583233(+) (opaR) [Vibrio fluvialis strain Isc7A]
ATGGACGCATCTATAGAGAAACGCCCTAGAACACGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCTACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTTCTC
ACCGACAACATCGATCTCGATATCCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACACTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCCAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1KD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

78.713

98.537

0.776
  hapR Vibrio cholerae strain A1552

78.713

98.537

0.776