Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NI390_RS04340 Genome accession   NZ_CP099915
Coordinates   918963..920324 (+) Length   453 a.a.
NCBI ID   WP_308413458.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 913963..925324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS04320 (NI390_04310) - 913970..914836 (-) 867 WP_047461911.1 MBL fold metallo-hydrolase -
  NI390_RS04325 (NI390_04315) - 915023..915661 (+) 639 WP_047461914.1 TetR/AcrR family transcriptional regulator -
  NI390_RS04335 (NI390_04325) uvrB 916646..918676 (+) 2031 WP_020327930.1 excinuclease ABC subunit UvrB -
  NI390_RS04340 (NI390_04330) luxO 918963..920324 (+) 1362 WP_308413458.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NI390_RS04345 (NI390_04335) luxU 920331..920669 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  NI390_RS04350 (NI390_04340) - 920658..921548 (-) 891 WP_222747260.1 YvcK family protein -
  NI390_RS04355 (NI390_04345) moaA 921859..922847 (+) 989 Protein_789 GTP 3',8-cyclase MoaA -
  NI390_RS04360 (NI390_04350) moaB 922919..923431 (+) 513 WP_158142279.1 molybdenum cofactor biosynthesis protein B -
  NI390_RS04365 (NI390_04355) moaC 923441..923920 (+) 480 WP_024373868.1 cyclic pyranopterin monophosphate synthase MoaC -
  NI390_RS04370 (NI390_04360) moaD 923917..924162 (+) 246 WP_024373869.1 molybdopterin synthase sulfur carrier subunit -
  NI390_RS04375 (NI390_04365) moaE 924164..924619 (+) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50247.44 Da        Isoelectric Point: 5.5480

>NTDB_id=702480 NI390_RS04340 WP_308413458.1 918963..920324(+) (luxO) [Vibrio fluvialis strain Isc7A]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISAPKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=702480 NI390_RS04340 WP_308413458.1 918963..920324(+) (luxO) [Vibrio fluvialis strain Isc7A]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCGGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGCATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAAGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGCACCGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.704

98.455

0.903
  pilR Pseudomonas aeruginosa PAK

39.644

99.117

0.393