Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP67_RS14220 Genome accession   NZ_CP115289
Coordinates   3019686..3020309 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain F004     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014686..3025309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS14195 (PCP67_14195) - 3015468..3016391 (-) 924 WP_003097322.1 choline ABC transporter substrate-binding protein -
  PCP67_RS14200 (PCP67_14200) betC 3016408..3017919 (-) 1512 WP_058199938.1 choline-sulfatase -
  PCP67_RS14205 (PCP67_14205) - 3018032..3018946 (+) 915 WP_034015633.1 choline sulfate utilization transcriptional regulator -
  PCP67_RS14210 (PCP67_14210) - 3018957..3019334 (+) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  PCP67_RS14215 (PCP67_14215) - 3019313..3019678 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  PCP67_RS14220 (PCP67_14220) letA 3019686..3020309 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  PCP67_RS14225 (PCP67_14225) trpA 3020495..3021301 (-) 807 WP_009875638.1 tryptophan synthase subunit alpha -
  PCP67_RS14230 (PCP67_14230) trpB 3021298..3022506 (-) 1209 WP_019484351.1 tryptophan synthase subunit beta -
  PCP67_RS14235 (PCP67_14235) trpI 3022610..3023497 (+) 888 WP_049955875.1 trpBA operon transcriptional activator TrpI -
  PCP67_RS14240 (PCP67_14240) - 3023598..3023813 (+) 216 WP_003097345.1 dodecin -
  PCP67_RS14245 (PCP67_14245) - 3023997..3024224 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=702205 PCP67_RS14220 WP_003111192.1 3019686..3020309(-) (letA) [Pseudomonas aeruginosa strain F004]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=702205 PCP67_RS14220 WP_003111192.1 3019686..3020309(-) (letA) [Pseudomonas aeruginosa strain F004]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTACAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362