Detailed information NTG0701969

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NIY04_RS18725
• Genome accession: NZ_CP099856
• Coordinates: 3533227..3534087 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152268.1
• Uniprot ID: A0A1E3M8A8
• Organism: Acinetobacter baumannii strain 17978S
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3528227..3539087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NIY04_RS16895 (NIY04_16895)	secG	3528832..3529161 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
NIY04_RS16900 (NIY04_16900)	tpiA	3529174..3529968 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
NIY04_RS16905 (NIY04_16905)	pilB	3530259..3531971 (+)	1713	WP_001274983.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NIY04_RS16910 (NIY04_16910)	pilC	3532001..3533227 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
NIY04_RS18725	pilD	3533227..3534087 (+)	861	WP_001152268.1	A24 family peptidase	Machinery gene
NIY04_RS16925 (NIY04_16925)	coaE	3534089..3534685 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
NIY04_RS16930 (NIY04_16930)	-	3534682..3535599 (-)	918	WP_000075016.1	DMT family transporter	-
NIY04_RS16935 (NIY04_16935)	rlmB	3535635..3536384 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NIY04_RS16940 (NIY04_16940)	-	3536486..3536812 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
NIY04_RS16945 (NIY04_16945)	-	3536889..3538199 (-)	1311	WP_000753297.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32094.47 Da
• Isoelectric Point: 7.1041

>NTDB_id=701969 NIY04_RS18725 WP_001152268.1 3533227..3534087(+) (pilD) [Acinetobacter baumannii strain 17978S]
MQDIIAYFIQNFTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=701969 NIY04_RS18725 WP_001152268.1 3533227..3534087(+) (pilD) [Acinetobacter baumannii strain 17978S]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTTACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGTAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A1E3M8A8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.971	97.552	0.507
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437