Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JMUB898_RS04265 | Genome accession | NZ_AP018587 |
| Coordinates | 906579..906974 (+) | Length | 131 a.a. |
| NCBI ID | WP_126501915.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain JMUB898 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 901579..911974
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMUB898_RS04235 (JMUB898_0856) | atpD | 901813..903225 (+) | 1413 | WP_002445568.1 | F0F1 ATP synthase subunit beta | - |
| JMUB898_RS04240 (JMUB898_0857) | - | 903245..903649 (+) | 405 | WP_002445567.1 | F0F1 ATP synthase subunit epsilon | - |
| JMUB898_RS04245 (JMUB898_0858) | - | 903799..904032 (+) | 234 | WP_037541859.1 | DUF1146 family protein | - |
| JMUB898_RS04250 (JMUB898_0859) | murA | 904142..905407 (+) | 1266 | WP_044466358.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| JMUB898_RS04255 (JMUB898_0860) | fabZ | 905449..905886 (+) | 438 | WP_002445561.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| JMUB898_RS04260 (JMUB898_0861) | - | 905943..906386 (-) | 444 | WP_037541858.1 | YwpF-like family protein | - |
| JMUB898_RS04265 (JMUB898_0862) | ssb | 906579..906974 (+) | 396 | WP_126501915.1 | single-stranded DNA-binding protein | Machinery gene |
| JMUB898_RS04270 (JMUB898_0863) | - | 907366..908088 (+) | 723 | WP_002445556.1 | transglycosylase family protein | - |
| JMUB898_RS04275 (JMUB898_0864) | tenA | 908387..909076 (+) | 690 | WP_002445555.1 | thiaminase II | - |
| JMUB898_RS04280 (JMUB898_0865) | thiD | 909069..909890 (+) | 822 | WP_126514784.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| JMUB898_RS04285 (JMUB898_0866) | thiM | 909883..910677 (+) | 795 | WP_002445553.1 | hydroxyethylthiazole kinase | - |
| JMUB898_RS04290 (JMUB898_0867) | thiE | 910678..911316 (+) | 639 | WP_002445552.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15142.96 Da Isoelectric Point: 5.0119
>NTDB_id=70196 JMUB898_RS04265 WP_126501915.1 906579..906974(+) (ssb) [Staphylococcus caprae strain JMUB898]
MLNKIVIVGRLTKDAQIYEKEDSRVATFCVATERNYKDENNEVSSDYLLCKAFGKTATNIEKYTSQATLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKSNEIISQNQFDEDTYHSDEFETINI
MLNKIVIVGRLTKDAQIYEKEDSRVATFCVATERNYKDENNEVSSDYLLCKAFGKTATNIEKYTSQATLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKSNEIISQNQFDEDTYHSDEFETINI
Nucleotide
Download Length: 396 bp
>NTDB_id=70196 JMUB898_RS04265 WP_126501915.1 906579..906974(+) (ssb) [Staphylococcus caprae strain JMUB898]
ATGTTAAATAAAATAGTAATTGTTGGTAGGTTAACTAAAGATGCCCAAATATATGAAAAGGAGGATAGTAGAGTTGCAAC
GTTTTGTGTAGCAACAGAAAGAAATTACAAAGACGAAAATAATGAAGTTTCGAGCGACTATTTACTGTGTAAGGCATTTG
GTAAAACAGCTACGAATATTGAAAAATATACCAGTCAAGCTACTTTAGTAGGGATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGGCAAACACATTTTGTAACCGAACTATATGTAGAAACGATTAAATTCATGTCTCCCAAAACAAAAAG
TAACGAAATTATCTCTCAAAATCAATTTGACGAAGACACTTATCACTCAGACGAATTTGAAACTATCAATATATAA
ATGTTAAATAAAATAGTAATTGTTGGTAGGTTAACTAAAGATGCCCAAATATATGAAAAGGAGGATAGTAGAGTTGCAAC
GTTTTGTGTAGCAACAGAAAGAAATTACAAAGACGAAAATAATGAAGTTTCGAGCGACTATTTACTGTGTAAGGCATTTG
GTAAAACAGCTACGAATATTGAAAAATATACCAGTCAAGCTACTTTAGTAGGGATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGGCAAACACATTTTGTAACCGAACTATATGTAGAAACGATTAAATTCATGTCTCCCAAAACAAAAAG
TAACGAAATTATCTCTCAAAATCAATTTGACGAAGACACTTATCACTCAGACGAATTTGAAACTATCAATATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
73.282 |
100 |
0.733 |
| ssb | Staphylococcus aureus MW2 |
72.519 |
100 |
0.725 |