Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP57_RS03555 Genome accession   NZ_CP115287
Coordinates   747616..748239 (+) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain F006     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 742616..753239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS03530 (PCP57_03530) - 743701..743928 (-) 228 WP_003097347.1 DUF1161 domain-containing protein -
  PCP57_RS03535 (PCP57_03535) - 744112..744327 (-) 216 WP_003097345.1 dodecin -
  PCP57_RS03540 (PCP57_03540) trpI 744428..745315 (-) 888 WP_073649077.1 trpBA operon transcriptional activator TrpI -
  PCP57_RS03545 (PCP57_03545) trpB 745419..746627 (+) 1209 WP_024918129.1 tryptophan synthase subunit beta -
  PCP57_RS03550 (PCP57_03550) trpA 746624..747430 (+) 807 WP_328994101.1 tryptophan synthase subunit alpha -
  PCP57_RS03555 (PCP57_03555) letA 747616..748239 (+) 624 WP_003111192.1 response regulator transcription factor Regulator
  PCP57_RS03560 (PCP57_03560) - 748247..748612 (+) 366 WP_033968195.1 Hpt domain-containing protein -
  PCP57_RS03565 (PCP57_03565) - 748591..748968 (-) 378 WP_024918132.1 DOPA 4,5-dioxygenase family protein -
  PCP57_RS03570 (PCP57_03570) - 748979..749893 (-) 915 WP_033968196.1 choline sulfate utilization transcriptional regulator -
  PCP57_RS03575 (PCP57_03575) betC 750006..751517 (+) 1512 WP_042169887.1 choline-sulfatase -
  PCP57_RS03580 (PCP57_03580) - 751534..752457 (+) 924 WP_328994106.1 choline ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=701957 PCP57_RS03555 WP_003111192.1 747616..748239(+) (letA) [Pseudomonas aeruginosa strain F006]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=701957 PCP57_RS03555 WP_003111192.1 747616..748239(+) (letA) [Pseudomonas aeruginosa strain F006]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGTAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362