Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP57_RS01645 Genome accession   NZ_CP115287
Coordinates   341433..341798 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F006     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336433..346798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS01630 (PCP57_01630) pilK 337777..338652 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  PCP57_RS01635 (PCP57_01635) pilJ 338713..340761 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PCP57_RS01640 (PCP57_01640) - 340846..341382 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP57_RS01645 (PCP57_01645) pilH 341433..341798 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP57_RS01650 (PCP57_01650) pilG 341845..342252 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP57_RS01655 (PCP57_01655) gshB 342507..343460 (+) 954 WP_003100943.1 glutathione synthase -
  PCP57_RS01660 (PCP57_01660) - 343607..344500 (+) 894 WP_003084580.1 TonB family protein -
  PCP57_RS01665 (PCP57_01665) - 344549..345118 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  PCP57_RS01670 (PCP57_01670) ruvX 345118..345552 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP57_RS01675 (PCP57_01675) pyrR 345664..346176 (+) 513 WP_033972296.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=701952 PCP57_RS01645 WP_003084587.1 341433..341798(-) (pilH) [Pseudomonas aeruginosa strain F006]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=701952 PCP57_RS01645 WP_003084587.1 341433..341798(-) (pilH) [Pseudomonas aeruginosa strain F006]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364