Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NIY04_RS02015 Genome accession   NZ_CP099856
Coordinates   423750..424385 (-) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain 17978S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418750..429385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS01980 (NIY04_01980) mlaE 419086..419862 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  NIY04_RS01985 (NIY04_01985) - 419862..420542 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NIY04_RS01990 (NIY04_01990) - 420569..421210 (+) 642 WP_009518191.1 ABC transporter substrate-binding protein -
  NIY04_RS01995 (NIY04_01995) - 421222..421509 (+) 288 WP_000250997.1 STAS domain-containing protein -
  NIY04_RS02000 (NIY04_02000) - 421579..422592 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NIY04_RS02005 (NIY04_02005) - 422750..423331 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  NIY04_RS02010 (NIY04_02010) - 423346..423747 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  NIY04_RS02015 (NIY04_02015) comF 423750..424385 (-) 636 WP_000472273.1 phosphoribosyltransferase family protein Machinery gene
  NIY04_RS02020 (NIY04_02020) recG 424378..426423 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  NIY04_RS02025 (NIY04_02025) - 426444..427259 (+) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  NIY04_RS02030 (NIY04_02030) adeT2 427339..428325 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=701937 NIY04_RS02015 WP_000472273.1 423750..424385(-) (comF) [Acinetobacter baumannii strain 17978S]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=701937 NIY04_RS02015 WP_000472273.1 423750..424385(-) (comF) [Acinetobacter baumannii strain 17978S]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991