Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NIY04_RS01530 Genome accession   NZ_CP099856
Coordinates   320555..321082 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 17978S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315555..326082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS01515 (NIY04_01515) pilM 318108..319166 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NIY04_RS01520 (NIY04_01520) pilN 319166..319807 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  NIY04_RS01525 (NIY04_01525) pilO 319804..320544 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  NIY04_RS01530 (NIY04_01530) pilP 320555..321082 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NIY04_RS01535 (NIY04_01535) pilQ 321150..323315 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  NIY04_RS01540 (NIY04_01540) aroK 323327..323896 (+) 570 WP_000643712.1 shikimate kinase AroK -
  NIY04_RS01545 (NIY04_01545) aroB 323925..325007 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -
  NIY04_RS01550 (NIY04_01550) - 325023..325898 (+) 876 WP_000218805.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=701928 NIY04_RS01530 WP_000695065.1 320555..321082(+) (pilP) [Acinetobacter baumannii strain 17978S]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=701928 NIY04_RS01530 WP_000695065.1 320555..321082(+) (pilP) [Acinetobacter baumannii strain 17978S]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714