Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NIY04_RS01520 Genome accession   NZ_CP099856
Coordinates   319166..319807 (+) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain 17978S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314166..324807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS01500 (NIY04_01500) - 314213..314545 (+) 333 WP_000169602.1 hypothetical protein -
  NIY04_RS01505 (NIY04_01505) - 314548..315372 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  NIY04_RS01510 (NIY04_01510) ponA 315390..317945 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  NIY04_RS01515 (NIY04_01515) pilM 318108..319166 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NIY04_RS01520 (NIY04_01520) pilN 319166..319807 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  NIY04_RS01525 (NIY04_01525) pilO 319804..320544 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  NIY04_RS01530 (NIY04_01530) pilP 320555..321082 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NIY04_RS01535 (NIY04_01535) pilQ 321150..323315 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  NIY04_RS01540 (NIY04_01540) aroK 323327..323896 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=701926 NIY04_RS01520 WP_000201223.1 319166..319807(+) (pilN) [Acinetobacter baumannii strain 17978S]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=701926 NIY04_RS01520 WP_000201223.1 319166..319807(+) (pilN) [Acinetobacter baumannii strain 17978S]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704