Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP32_RS18000 Genome accession   NZ_CP115285
Coordinates   3865129..3865725 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3860129..3870725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS17980 (PCP32_17975) aroK 3861260..3861778 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP32_RS17985 (PCP32_17980) pilQ 3861790..3863934 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PCP32_RS17990 (PCP32_17985) comL/pilP 3863988..3864512 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP32_RS17995 (PCP32_17990) pilO 3864509..3865132 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP32_RS18000 (PCP32_17995) pilN 3865129..3865725 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP32_RS18005 (PCP32_18000) pilM 3865725..3866789 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP32_RS18010 (PCP32_18005) - 3866974..3869445 (+) 2472 WP_058152670.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=701895 PCP32_RS18000 WP_003095839.1 3865129..3865725(-) (pilN) [Pseudomonas aeruginosa strain F007]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701895 PCP32_RS18000 WP_003095839.1 3865129..3865725(-) (pilN) [Pseudomonas aeruginosa strain F007]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369