Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NIY03_RS02365 Genome accession   NZ_CP099855
Coordinates   482709..483593 (+) Length   294 a.a.
NCBI ID   WP_000914771.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477709..488593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS02340 (NIY03_02340) - 478107..479354 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  NIY03_RS02345 (NIY03_02345) wrbA 479642..480235 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  NIY03_RS02350 (NIY03_02350) - 480288..480863 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  NIY03_RS02355 (NIY03_02355) - 480936..481649 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  NIY03_RS02360 (NIY03_02360) - 481807..482478 (-) 672 WP_001193955.1 hypothetical protein -
  NIY03_RS02365 (NIY03_02365) tonB2 482709..483593 (+) 885 WP_000914771.1 energy transducer TonB Machinery gene
  NIY03_RS02370 (NIY03_02370) ybeY 483683..484159 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  NIY03_RS02375 (NIY03_02375) - 484169..485257 (-) 1089 WP_000122983.1 PhoH family protein -
  NIY03_RS02380 (NIY03_02380) miaB 485295..486746 (-) 1452 WP_049594797.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33573.46 Da        Isoelectric Point: 9.0947

>NTDB_id=701894 NIY03_RS02365 WP_000914771.1 482709..483593(+) (tonB2) [Acinetobacter baumannii strain 17978R]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=701894 NIY03_RS02365 WP_000914771.1 482709..483593(+) (tonB2) [Acinetobacter baumannii strain 17978R]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99