Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP32_RS17990 Genome accession   NZ_CP115285
Coordinates   3863988..3864512 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3858988..3869512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS17975 (PCP32_17970) aroB 3860104..3861210 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  PCP32_RS17980 (PCP32_17975) aroK 3861260..3861778 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP32_RS17985 (PCP32_17980) pilQ 3861790..3863934 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PCP32_RS17990 (PCP32_17985) comL/pilP 3863988..3864512 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP32_RS17995 (PCP32_17990) pilO 3864509..3865132 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP32_RS18000 (PCP32_17995) pilN 3865129..3865725 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP32_RS18005 (PCP32_18000) pilM 3865725..3866789 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP32_RS18010 (PCP32_18005) - 3866974..3869445 (+) 2472 WP_058152670.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=701893 PCP32_RS17990 WP_003095836.1 3863988..3864512(-) (comL/pilP) [Pseudomonas aeruginosa strain F007]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=701893 PCP32_RS17990 WP_003095836.1 3863988..3864512(-) (comL/pilP) [Pseudomonas aeruginosa strain F007]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362