Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   NIY03_RS01660 Genome accession   NZ_CP099855
Coordinates   352453..352935 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347453..357935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS01650 (NIY03_01650) pilX 347756..348574 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NIY03_RS01655 (NIY03_01655) pilY1 348586..352440 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  NIY03_RS01660 (NIY03_01660) pilY2 352453..352935 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  NIY03_RS01665 (NIY03_01665) pilE 352932..353357 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene
  NIY03_RS01670 (NIY03_01670) rpsP 353504..353755 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  NIY03_RS01675 (NIY03_01675) rimM 353775..354323 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  NIY03_RS01680 (NIY03_01680) trmD 354369..355109 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NIY03_RS01685 (NIY03_01685) rplS 355317..355685 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  NIY03_RS01690 (NIY03_01690) - 355737..356678 (-) 942 WP_085943440.1 triacylglycerol lipase -
  NIY03_RS01695 (NIY03_01695) - 356793..357827 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=701890 NIY03_RS01660 WP_001046417.1 352453..352935(+) (pilY2) [Acinetobacter baumannii strain 17978R]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=701890 NIY03_RS01660 WP_001046417.1 352453..352935(+) (pilY2) [Acinetobacter baumannii strain 17978R]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444