Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NIY03_RS01635 Genome accession   NZ_CP099855
Coordinates   345730..346203 (+) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii strain 17978R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340730..351203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS01610 (NIY03_01610) - 341193..343298 (-) 2106 WP_001117590.1 HD domain-containing protein -
  NIY03_RS01615 (NIY03_01615) - 343338..343468 (-) 131 Protein_309 hypothetical protein -
  NIY03_RS01620 (NIY03_01620) rpoZ 343507..343785 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIY03_RS01625 (NIY03_01625) gmk 343858..344487 (-) 630 WP_000015937.1 guanylate kinase -
  NIY03_RS01630 (NIY03_01630) ispH 344610..345560 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIY03_RS01635 (NIY03_01635) fimU 345730..346203 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  NIY03_RS01640 (NIY03_01640) pilV 346197..346757 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NIY03_RS01645 (NIY03_01645) pilW 346758..347759 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  NIY03_RS01650 (NIY03_01650) pilX 347756..348574 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=701885 NIY03_RS01635 WP_001214058.1 345730..346203(+) (fimU) [Acinetobacter baumannii strain 17978R]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=701885 NIY03_RS01635 WP_001214058.1 345730..346203(+) (fimU) [Acinetobacter baumannii strain 17978R]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987