Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NIY03_RS01640 Genome accession   NZ_CP099855
Coordinates   346197..346757 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341197..351757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS01615 (NIY03_01615) - 343338..343468 (-) 131 Protein_309 hypothetical protein -
  NIY03_RS01620 (NIY03_01620) rpoZ 343507..343785 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIY03_RS01625 (NIY03_01625) gmk 343858..344487 (-) 630 WP_000015937.1 guanylate kinase -
  NIY03_RS01630 (NIY03_01630) ispH 344610..345560 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIY03_RS01635 (NIY03_01635) fimU 345730..346203 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  NIY03_RS01640 (NIY03_01640) pilV 346197..346757 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NIY03_RS01645 (NIY03_01645) pilW 346758..347759 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  NIY03_RS01650 (NIY03_01650) pilX 347756..348574 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=701886 NIY03_RS01640 WP_002194578.1 346197..346757(+) (pilV) [Acinetobacter baumannii strain 17978R]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=701886 NIY03_RS01640 WP_002194578.1 346197..346757(+) (pilV) [Acinetobacter baumannii strain 17978R]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTACGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414