Detailed information NTG0701867

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NDO72_RS21005
• Genome accession: NZ_CP099834
• Coordinates: 4356612..4357412 (+)
• Length: 266 a.a.
• NCBI ID: WP_087827522.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain Y7-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4351612..4362412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDO72_RS20970 (NDO72_20970)	gspH	4351765..4352280 (+)	516	WP_080820702.1	type II secretion system minor pseudopilin GspH	-
NDO72_RS20975 (NDO72_20975)	gspI	4352277..4352642 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
NDO72_RS20980 (NDO72_20980)	gspJ	4352639..4353235 (+)	597	WP_080820703.1	type II secretion system minor pseudopilin GspJ	-
NDO72_RS20985 (NDO72_20985)	gspK	4353232..4354212 (+)	981	WP_080820705.1	type II secretion system minor pseudopilin GspK	-
NDO72_RS20990 (NDO72_20990)	gspL	4354205..4355401 (+)	1197	WP_080820707.1	type II secretion system protein GspL	-
NDO72_RS20995 (NDO72_20995)	-	4355394..4355879 (+)	486	WP_023292019.1	type II secretion system protein M	-
NDO72_RS21000 (NDO72_21000)	-	4355869..4356597 (+)	729	WP_023292018.1	type II secretion system protein N	-
NDO72_RS21005 (NDO72_21005)	pilD	4356612..4357412 (+)	801	WP_087827522.1	A24 family peptidase	Machinery gene
NDO72_RS21010 (NDO72_21010)	hrpB	4357460..4359889 (-)	2430	WP_064155382.1	ATP-dependent helicase HrpB	-
NDO72_RS21015 (NDO72_21015)	thpR	4359962..4360498 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
NDO72_RS21020 (NDO72_21020)	sfsA	4360498..4361214 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
NDO72_RS21025 (NDO72_21025)	dksA	4361377..4361832 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29290.88 Da
• Isoelectric Point: 8.7151

>NTDB_id=701867 NDO72_RS21005 WP_087827522.1 4356612..4357412(+) (pilD) [Klebsiella quasipneumoniae strain Y7-3]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSCCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=701867 NDO72_RS21005 WP_087827522.1 4356612..4357412(+) (pilD) [Klebsiella quasipneumoniae strain Y7-3]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATGCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.487	98.872	0.44
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429