Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL289_RS12505 Genome accession   NZ_AP018586
Coordinates   2578433..2578942 (-) Length   169 a.a.
NCBI ID   WP_002445148.1    Uniprot ID   -
Organism   Staphylococcus caprae strain JMUB590     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2573433..2583942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL289_RS12480 (JMUB590_2525) - 2573568..2574176 (+) 609 WP_126502025.1 helix-turn-helix domain-containing protein -
  EL289_RS12860 (JMUB590_2526) - 2574291..2574428 (+) 138 WP_172594637.1 hypothetical protein -
  EL289_RS12485 (JMUB590_2527) - 2574451..2575728 (+) 1278 WP_126502026.1 hypothetical protein -
  EL289_RS12490 (JMUB590_2529) - 2575981..2577204 (+) 1224 WP_126502027.1 tyrosine-type recombinase/integrase -
  EL289_RS12495 (JMUB590_2530) - 2577337..2577999 (+) 663 WP_001663086.1 NYN domain-containing protein -
  EL289_RS12500 (JMUB590_2531) rpsR 2578143..2578385 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  EL289_RS12505 (JMUB590_2532) ssbA 2578433..2578942 (-) 510 WP_002445148.1 single-stranded DNA-binding protein Machinery gene
  EL289_RS12510 (JMUB590_2533) rpsF 2578964..2579260 (-) 297 WP_002445146.1 30S ribosomal protein S6 -
  EL289_RS12515 (JMUB590_2534) - 2579673..2580488 (+) 816 WP_002445144.1 GH25 family lysozyme -
  EL289_RS12520 (JMUB590_2535) - 2580563..2580754 (+) 192 WP_002445142.1 hypothetical protein -
  EL289_RS12525 (JMUB590_2536) ychF 2581180..2582277 (-) 1098 WP_002445137.1 redox-regulated ATPase YchF -
  EL289_RS12530 (JMUB590_2537) - 2582289..2582492 (-) 204 WP_002445134.1 DUF951 domain-containing protein -
  EL289_RS12535 (JMUB590_2538) - 2582513..2583394 (-) 882 WP_002445133.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18702.25 Da        Isoelectric Point: 4.7305

>NTDB_id=70185 EL289_RS12505 WP_002445148.1 2578433..2578942(-) (ssbA) [Staphylococcus caprae strain JMUB590]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSKSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=70185 EL289_RS12505 WP_002445148.1 2578433..2578942(-) (ssbA) [Staphylococcus caprae strain JMUB590]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAATTGTGTTGTCT
TCAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGCTTAGCTGGCGTTGATGGTCGCATACAATCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
CTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATACAATAACAATAATTCATCAAAATCTAATCAATCTGATAATCCATTTGCAAATGCGAATGGTCCAATT
GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.011

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

54.335

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment