Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP32_RS02805 Genome accession   NZ_CP115285
Coordinates   635620..636264 (-) Length   214 a.a.
NCBI ID   WP_058151930.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F007     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 630620..641264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS02785 (PCP32_02785) - 630895..632826 (-) 1932 WP_004350679.1 tyrosine-type recombinase/integrase -
  PCP32_RS02795 (PCP32_02795) pgsA 633199..633759 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PCP32_RS02800 (PCP32_02800) uvrC 633793..635619 (-) 1827 WP_058151931.1 excinuclease ABC subunit UvrC -
  PCP32_RS02805 (PCP32_02805) letA 635620..636264 (-) 645 WP_058151930.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PCP32_RS02810 (PCP32_02810) pqsH 636607..637755 (-) 1149 WP_058151929.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PCP32_RS02815 (PCP32_02815) - 638370..639398 (+) 1029 WP_009314109.1 AraC family transcriptional regulator -
  PCP32_RS02820 (PCP32_02820) - 639414..640628 (-) 1215 WP_023125847.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23668.62 Da        Isoelectric Point: 6.1073

>NTDB_id=701847 PCP32_RS02805 WP_058151930.1 635620..636264(-) (letA) [Pseudomonas aeruginosa strain F007]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDFPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=701847 PCP32_RS02805 WP_058151930.1 635620..636264(-) (letA) [Pseudomonas aeruginosa strain F007]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCTTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGACCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTACATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTTCCCCTTCGACTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.028

98.598

0.533
  letA Legionella pneumophila strain ERS1305867

54.028

98.598

0.533