Detailed information NTG0701743

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LNQ41_RS03795
• Genome accession: NZ_CP099808
• Coordinates: 835559..836350 (-)
• Length: 263 a.a.
• NCBI ID: WP_004722684.1
• Uniprot ID: -
• Organism: Yersinia ruckeri strain NVI-11076
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 830559..841350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNQ41_RS03780 (LNQ41_003775)	-	831747..833129 (-)	1383	WP_248594176.1	PepSY-associated TM helix domain-containing protein	-
LNQ41_RS03785 (LNQ41_003780)	gbpA	833249..834739 (-)	1491	WP_004722689.1	N-acetylglucosamine-binding protein GbpA	-
LNQ41_RS03790 (LNQ41_003785)	gspS	835165..835539 (+)	375	WP_004722686.1	type II secretion system pilot lipoprotein GspS	-
LNQ41_RS03795 (LNQ41_003790)	pilD	835559..836350 (-)	792	WP_004722684.1	prepilin peptidase	Machinery gene
LNQ41_RS03800 (LNQ41_003795)	gspM	836350..836847 (-)	498	WP_230596562.1	type II secretion system protein GspM	-
LNQ41_RS03805 (LNQ41_003800)	gspL	836831..838030 (-)	1200	WP_004722681.1	type II secretion system protein GspL	-
LNQ41_RS03810 (LNQ41_003805)	gspK	838032..839117 (-)	1086	WP_230596563.1	type II secretion system minor pseudopilin GspK	-
LNQ41_RS03815 (LNQ41_003810)	gspJ	839107..839712 (-)	606	WP_038251265.1	type II secretion system minor pseudopilin GspJ	-
LNQ41_RS03820 (LNQ41_003815)	gspI	839709..840071 (-)	363	WP_038244547.1	type II secretion system minor pseudopilin GspI	-
LNQ41_RS03825 (LNQ41_003820)	-	840068..840622 (-)	555	WP_004722675.1	GspH/FimT family pseudopilin	-
LNQ41_RS03830 (LNQ41_003825)	gspG	840667..841134 (-)	468	WP_038244546.1	type II secretion system major pseudopilin GspG	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 29629.85 Da
• Isoelectric Point: 8.4833

>NTDB_id=701743 LNQ41_RS03795 WP_004722684.1 835559..836350(-) (pilD) [Yersinia ruckeri strain NVI-11076]
MDALYMAQMIAPLWWGGLAVLGLCVGSFLNVAIYRLPLMLTRENPHGFNLCLPHSHCPQCKHSLKWRDNIPVFSWLFLQG
QCRYCRASIPVRYPLVEIMTMLMTLFIAAVIPLGSPLLAALLLSWMLIALTMIDIDHLLLPDNLTLPLLWMGLLFHLFDS
RLALSEAVIGAVAGYLILWCLYWSFWLLTKREALGYGDFKLLAALGAWLGWMALPSLLLIASLCGMSFALAARLLRGRPL
NTALPFGPFLAFGGWILFLQYYR

Nucleotide

• Length: 792 bp

>NTDB_id=701743 LNQ41_RS03795 WP_004722684.1 835559..836350(-) (pilD) [Yersinia ruckeri strain NVI-11076]
ATGGATGCGCTCTATATGGCTCAAATGATAGCGCCACTGTGGTGGGGCGGGCTGGCGGTTCTTGGCCTGTGTGTCGGTAG
TTTTCTCAACGTCGCTATTTATCGGCTACCGCTGATGTTAACCCGCGAAAATCCGCATGGTTTTAATCTGTGTCTACCTC
ATTCCCACTGTCCTCAGTGTAAACATTCGTTGAAATGGCGAGATAATATTCCTGTATTCAGTTGGCTATTCCTGCAAGGA
CAATGTCGTTACTGTCGGGCATCTATCCCAGTGCGCTACCCGCTGGTTGAAATCATGACGATGTTGATGACCTTGTTTAT
TGCTGCAGTCATCCCATTGGGCAGCCCGTTACTGGCCGCACTACTACTCAGTTGGATGCTGATCGCGTTAACCATGATCG
ATATTGACCACTTGCTCTTACCGGATAATCTGACATTGCCTCTGCTATGGATGGGGCTACTTTTTCACCTGTTTGATAGT
CGGTTGGCATTAAGTGAGGCAGTGATTGGTGCTGTCGCAGGATATTTGATCTTATGGTGTCTTTACTGGTCGTTCTGGCT
GTTGACGAAGCGGGAAGCTCTGGGCTACGGAGACTTTAAGTTATTAGCTGCATTAGGTGCCTGGCTAGGATGGATGGCGT
TACCCTCTTTACTTTTGATCGCCTCGCTCTGCGGCATGAGTTTCGCACTGGCCGCACGTCTCCTACGGGGCAGACCACTG
AATACGGCACTGCCATTCGGGCCGTTTCTCGCATTCGGTGGCTGGATTCTATTCCTTCAGTACTACCGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (122-229)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.181	96.578	0.494
pilD	Vibrio campbellii strain DS40M4	46.667	96.958	0.452
pilD	Neisseria gonorrhoeae MS11	44.531	97.338	0.433
pilD	Acinetobacter baumannii D1279779	42.471	98.479	0.418
pilD	Acinetobacter nosocomialis M2	42.085	98.479	0.414