Detailed information NTG0701479

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NHF44_RS21100
• Genome accession: NZ_CP099743
• Coordinates: 4344709..4345509 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 503666-2-2019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4339709..4350509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHF44_RS21065 (NHF44_21055)	gspH	4339865..4340380 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
NHF44_RS21070 (NHF44_21060)	gspI	4340377..4340742 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NHF44_RS21075 (NHF44_21065)	gspJ	4340739..4341335 (+)	597	WP_087761591.1	type II secretion system minor pseudopilin GspJ	-
NHF44_RS21080 (NHF44_21070)	gspK	4341332..4342318 (+)	987	WP_260565862.1	type II secretion system minor pseudopilin GspK	-
NHF44_RS21085 (NHF44_21075)	gspL	4342305..4343498 (+)	1194	WP_087867005.1	type II secretion system protein GspL	-
NHF44_RS21090 (NHF44_21080)	-	4343491..4343976 (+)	486	WP_004151943.1	type II secretion system protein M	-
NHF44_RS21095 (NHF44_21085)	-	4343966..4344712 (+)	747	WP_004145897.1	type II secretion system protein N	-
NHF44_RS21100 (NHF44_21090)	pilD	4344709..4345509 (+)	801	WP_004213441.1	prepilin peptidase	Machinery gene
NHF44_RS21105 (NHF44_21095)	hrpB	4345557..4347986 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
NHF44_RS21110 (NHF44_21100)	thpR	4348059..4348595 (+)	537	WP_087867007.1	RNA 2',3'-cyclic phosphodiesterase	-
NHF44_RS21115 (NHF44_21105)	sfsA	4348595..4349311 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NHF44_RS21120 (NHF44_21110)	dksA	4349474..4349929 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=701479 NHF44_RS21100 WP_004213441.1 4344709..4345509(+) (pilD) [Klebsiella pneumoniae strain 503666-2-2019]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=701479 NHF44_RS21100 WP_004213441.1 4344709..4345509(+) (pilD) [Klebsiella pneumoniae strain 503666-2-2019]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCATGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425