Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PCP87_RS15840 Genome accession   NZ_CP115277
Coordinates   3350071..3351432 (+) Length   453 a.a.
NCBI ID   WP_010793777.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3345071..3356432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP87_RS15805 (PCP87_15820) - 3345168..3345944 (+) 777 WP_003110878.1 ferredoxin--NADP reductase -
  PCP87_RS15810 (PCP87_15825) mscL 3346049..3346462 (-) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  PCP87_RS15815 (PCP87_15830) - 3346505..3346993 (+) 489 WP_170835787.1 hypothetical protein -
  PCP87_RS15820 (PCP87_15835) katB 3346990..3348531 (+) 1542 WP_003094881.1 catalase KatB -
  PCP87_RS15825 (PCP87_15840) - 3348585..3349136 (+) 552 WP_003121338.1 ankyrin repeat domain-containing protein -
  PCP87_RS15830 (PCP87_15845) - 3349211..3349465 (+) 255 WP_003104887.1 YdcH family protein -
  PCP87_RS15835 (PCP87_15850) - 3349527..3349961 (-) 435 WP_003112796.1 CopD family protein -
  PCP87_RS15840 (PCP87_15855) radA/sms 3350071..3351432 (+) 1362 WP_010793777.1 DNA repair protein RadA Machinery gene
  PCP87_RS15845 (PCP87_15860) mapZ 3351439..3351816 (-) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  PCP87_RS15850 (PCP87_15865) - 3352019..3352525 (+) 507 WP_003094862.1 DUF3015 domain-containing protein -
  PCP87_RS15855 (PCP87_15870) - 3352863..3354929 (+) 2067 WP_003094859.1 carbon starvation CstA family protein -
  PCP87_RS15860 (PCP87_15875) - 3354978..3355181 (+) 204 WP_003094856.1 YbdD/YjiX family protein -
  PCP87_RS15865 (PCP87_15880) yjiA 3355241..3356245 (+) 1005 WP_003094852.1 GTPase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48379.79 Da        Isoelectric Point: 6.8357

>NTDB_id=701388 PCP87_RS15840 WP_010793777.1 3350071..3351432(+) (radA/sms) [Pseudomonas aeruginosa strain F012]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQPANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=701388 PCP87_RS15840 WP_010793777.1 3350071..3351432(+) (radA/sms) [Pseudomonas aeruginosa strain F012]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
CGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTTCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)

AAA domain (AAA_25)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466