Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NH461_RS02100 Genome accession   NZ_CP099734
Coordinates   437812..438417 (-) Length   201 a.a.
NCBI ID   WP_261601695.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 432812..443417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS02085 (NH461_02080) - 433706..434719 (+) 1014 WP_261601692.1 Fe(3+) ABC transporter substrate-binding protein -
  NH461_RS02090 (NH461_02085) - 434888..436516 (+) 1629 WP_261601693.1 ABC transporter permease -
  NH461_RS02095 (NH461_02090) - 436516..437553 (+) 1038 WP_261601694.1 ABC transporter ATP-binding protein -
  NH461_RS02100 (NH461_02095) opaR 437812..438417 (-) 606 WP_261601695.1 TetR/AcrR family transcriptional regulator Regulator
  NH461_RS02105 (NH461_02100) hpt 438645..439178 (+) 534 WP_261601696.1 hypoxanthine phosphoribosyltransferase -
  NH461_RS02110 (NH461_02105) can 439245..439901 (-) 657 WP_261601697.1 carbonate dehydratase -
  NH461_RS02115 (NH461_02110) - 440130..441053 (+) 924 WP_261601698.1 ABC transporter ATP-binding protein -
  NH461_RS02120 (NH461_02115) - 441050..441820 (+) 771 WP_261601699.1 ABC transporter permease -
  NH461_RS02125 (NH461_02120) panC 441920..442795 (-) 876 WP_261601700.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23102.12 Da        Isoelectric Point: 5.6443

>NTDB_id=701388 NH461_RS02100 WP_261601695.1 437812..438417(-) (opaR) [Photobacterium sp. TY1-4]
MDTIVKKTRTRLSPEKRKQQLLDFSLEVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEQVLSQVENRFSQVLT
DCLGADNRPLYARLTCFTDHLIDAVIEQQDWLKVWYEWSTSVRDEIWPQFVGSNKVNHERIVEMFAQGINNQEVENTRSA
EELTWQLHGICYVLYLQSNISPDQEAMRQQAGSHIASLLGK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=701388 NH461_RS02100 WP_261601695.1 437812..438417(-) (opaR) [Photobacterium sp. TY1-4]
ATGGATACGATCGTCAAAAAAACCAGAACTCGTCTCTCACCTGAAAAGAGAAAACAGCAACTGCTGGATTTTTCCTTGGA
AGTCTTCGCCCGACGCGGGATTGGCCGGGCCGGCCACGCAGACATCGCCGAAATGGCCAATGTCTCCGTCGCGACGGTGT
TTAACTACTTCCCGACCCGGGAAGCCCTGGTCGAGCAAGTACTGAGCCAGGTAGAAAACCGTTTCAGCCAAGTCCTGACC
GACTGTCTGGGCGCGGACAACCGGCCGCTCTACGCGCGCCTGACCTGCTTCACGGATCACCTGATTGATGCCGTCATCGA
GCAACAGGACTGGCTGAAAGTCTGGTATGAATGGAGCACCTCGGTACGCGATGAAATCTGGCCGCAGTTTGTCGGCAGCA
ACAAAGTCAATCACGAGCGGATCGTCGAAATGTTTGCCCAGGGCATCAACAATCAGGAAGTTGAGAACACACGCAGCGCC
GAAGAGCTGACCTGGCAACTGCATGGTATTTGCTACGTGCTGTACCTGCAGAGCAACATCAGTCCGGATCAGGAGGCGAT
GCGCCAGCAAGCCGGATCACACATCGCATCGCTGCTCGGGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

49

99.502

0.488
  hapR Vibrio cholerae C6706

46.429

97.512

0.453
  hapR Vibrio cholerae strain A1552

46.429

97.512

0.453