Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP87_RS13500 Genome accession   NZ_CP115277
Coordinates   2825544..2826140 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2820544..2831140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP87_RS13490 (PCP87_13500) - 2821824..2824295 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PCP87_RS13495 (PCP87_13505) pilM 2824480..2825544 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP87_RS13500 (PCP87_13510) pilN 2825544..2826140 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP87_RS13505 (PCP87_13515) pilO 2826137..2826760 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP87_RS13510 (PCP87_13520) comL/pilP 2826757..2827281 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP87_RS13515 (PCP87_13525) pilQ 2827335..2829479 (+) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  PCP87_RS13520 (PCP87_13530) aroK 2829491..2830009 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=701381 PCP87_RS13500 WP_003095839.1 2825544..2826140(+) (pilN) [Pseudomonas aeruginosa strain F012]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701381 PCP87_RS13500 WP_003095839.1 2825544..2826140(+) (pilN) [Pseudomonas aeruginosa strain F012]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369