Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NEE09_RS08605 Genome accession   NZ_CP099641
Coordinates   1651956..1652687 (-) Length   243 a.a.
NCBI ID   WP_000889925.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646956..1657687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS08575 blpC 1647505..1647660 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  NEE09_RS08580 - 1647702..1649042 (-) 1341 WP_001017638.1 sensor histidine kinase -
  NEE09_RS08585 comE/blpR 1649056..1649793 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  NEE09_RS08590 - 1649798..1650136 (-) 339 WP_000682135.1 LytTR family DNA-binding domain-containing protein -
  NEE09_RS08595 - 1650413..1650742 (+) 330 WP_000132572.1 hypothetical protein -
  NEE09_RS08600 - 1650910..1651959 (-) 1050 WP_000653767.1 ABC transporter permease -
  NEE09_RS08605 pptA 1651956..1652687 (-) 732 WP_000889925.1 ABC transporter ATP-binding protein Regulator
  NEE09_RS08610 - 1652755..1653165 (+) 411 WP_001278299.1 HIT family protein -
  NEE09_RS08615 - 1653175..1653462 (+) 288 WP_000777760.1 hypothetical protein -
  NEE09_RS08620 - 1653624..1653863 (+) 240 WP_001810235.1 hypothetical protein -
  NEE09_RS08625 dnaJ 1654197..1655333 (-) 1137 WP_001810236.1 molecular chaperone DnaJ -
  NEE09_RS08630 - 1655735..1656091 (-) 357 WP_000114433.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26992.50 Da        Isoelectric Point: 4.7792

>NTDB_id=701223 NEE09_RS08605 WP_000889925.1 1651956..1652687(-) (pptA) [Streptococcus pneumoniae strain ATCC 700671]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMLRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=701223 NEE09_RS08605 WP_000889925.1 1651956..1652687(-) (pptA) [Streptococcus pneumoniae strain ATCC 700671]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGCTCCGTCTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704