Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   NEE09_RS01700 Genome accession   NZ_CP099641
Coordinates   316443..317480 (+) Length   345 a.a.
NCBI ID   WP_001813016.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 311443..322480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS01665 yidC 311478..312404 (-) 927 WP_000835955.1 membrane protein insertase YidC -
  NEE09_RS01670 - 312482..312760 (-) 279 WP_001174614.1 acylphosphatase -
  NEE09_RS01675 - 312794..313534 (+) 741 WP_000152679.1 RNA methyltransferase -
  NEE09_RS01680 - 313590..314273 (+) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  NEE09_RS01685 asnA 314385..315377 (+) 993 WP_000747993.1 aspartate--ammonia ligase -
  NEE09_RS01690 rsmD 315442..315981 (+) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NEE09_RS01695 coaD 315971..316459 (+) 489 WP_001280746.1 pantetheine-phosphate adenylyltransferase -
  NEE09_RS01700 sepM 316443..317480 (+) 1038 WP_001813016.1 SepM family pheromone-processing serine protease Regulator
  NEE09_RS01705 - 317538..317768 (+) 231 WP_000250390.1 DUF1146 family protein -
  NEE09_RS01710 murA 317792..319075 (+) 1284 WP_000358032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NEE09_RS01715 - 319068..319256 (+) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  NEE09_RS01720 endA 319295..320119 (+) 825 WP_001036791.1 DNA-entry nuclease EndA Machinery gene
  NEE09_RS01725 - 320410..321741 (+) 1332 WP_000390042.1 hemolysin family protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37609.64 Da        Isoelectric Point: 4.9590

>NTDB_id=701179 NEE09_RS01700 WP_001813016.1 316443..317480(+) (sepM) [Streptococcus pneumoniae strain ATCC 700671]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKEIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIDLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=701179 NEE09_RS01700 WP_001813016.1 316443..317480(+) (sepM) [Streptococcus pneumoniae strain ATCC 700671]
ATGAAAAAAAAGATTAGATGGCCTTTGTATGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTGGTGCCTTTGCC
CTACTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCTACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGAAATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGACTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGACTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.357

99.13

0.588