Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF674_RS19020 Genome accession   NZ_CP099610
Coordinates   4303254..4303889 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas moraviensis strain OTU5VILLAA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4298254..4308889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF674_RS18985 (NF674_18985) - 4298647..4299117 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  NF674_RS18990 (NF674_18990) murB 4299368..4300387 (-) 1020 WP_042610692.1 UDP-N-acetylmuramate dehydrogenase -
  NF674_RS18995 (NF674_18995) - 4300384..4300848 (-) 465 WP_064361450.1 low molecular weight protein-tyrosine-phosphatase -
  NF674_RS19000 (NF674_19000) kdsB 4300848..4301612 (-) 765 WP_042610690.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF674_RS19005 (NF674_19005) - 4301609..4301794 (-) 186 WP_042610737.1 Trm112 family protein -
  NF674_RS19010 (NF674_19010) lpxK 4301819..4302829 (-) 1011 WP_042610689.1 tetraacyldisaccharide 4'-kinase -
  NF674_RS19015 (NF674_19015) - 4302829..4303257 (-) 429 WP_042610688.1 biopolymer transporter ExbD -
  NF674_RS19020 (NF674_19020) exbB 4303254..4303889 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF674_RS19025 (NF674_19025) comA 4303991..4306225 (-) 2235 WP_042610687.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF674_RS19030 (NF674_19030) - 4306362..4306880 (+) 519 WP_042610686.1 DUF2062 domain-containing protein -
  NF674_RS19035 (NF674_19035) - 4307021..4307800 (-) 780 WP_039760202.1 ABC transporter permease -
  NF674_RS19040 (NF674_19040) - 4307797..4308729 (-) 933 WP_042610685.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=701105 NF674_RS19020 WP_007908216.1 4303254..4303889(-) (exbB) [Pseudomonas moraviensis strain OTU5VILLAA1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=701105 NF674_RS19020 WP_007908216.1 4303254..4303889(-) (exbB) [Pseudomonas moraviensis strain OTU5VILLAA1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCGGCCATGGCGATCGTTGC
CGAACGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAGCTCGAACGCTATGT
CAACGCGTTGGGCACCATCGCCGCGATGTCGCCGTTGCTCGGTCTGCTCGGCACTGTGCTCGGCATGATCGATATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCATCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848