Detailed information NTG0701082

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NF673_RS22380
• Genome accession: NZ_CP099609
• Coordinates: 5068355..5069227 (+)
• Length: 290 a.a.
• NCBI ID: WP_065615666.1
• Uniprot ID: -
• Organism: Pseudomonas moraviensis strain OTU5MASSA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5063355..5074227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF673_RS22355 (NF673_22355)	-	5063548..5063847 (+)	300	WP_064364128.1	DUF2845 domain-containing protein	-
NF673_RS22360 (NF673_22360)	-	5064115..5064468 (-)	354	WP_064364127.1	BON domain-containing protein	-
NF673_RS22365 (NF673_22365)	-	5064769..5065206 (-)	438	WP_064364126.1	pilin	-
NF673_RS22370 (NF673_22370)	pilB	5065433..5067133 (+)	1701	WP_042610478.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NF673_RS22375 (NF673_22375)	pilC	5067136..5068353 (+)	1218	WP_065615667.1	type II secretion system F family protein	Machinery gene
NF673_RS22380 (NF673_22380)	pilD	5068355..5069227 (+)	873	WP_065615666.1	A24 family peptidase	Machinery gene
NF673_RS22385 (NF673_22385)	coaE	5069224..5069847 (+)	624	WP_042610481.1	dephospho-CoA kinase	-
NF673_RS22390 (NF673_22390)	yacG	5069844..5070044 (+)	201	WP_016773149.1	DNA gyrase inhibitor YacG	-
NF673_RS22395 (NF673_22395)	-	5070094..5070783 (-)	690	WP_252880799.1	energy-coupling factor ABC transporter permease	-
NF673_RS22400 (NF673_22400)	-	5070973..5071599 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
NF673_RS22405 (NF673_22405)	-	5071596..5072123 (+)	528	WP_065615663.1	MOSC domain-containing protein	-
NF673_RS22410 (NF673_22410)	-	5072175..5072348 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
NF673_RS22415 (NF673_22415)	-	5072412..5073710 (+)	1299	WP_016773144.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31895.13 Da
• Isoelectric Point: 7.0620

>NTDB_id=701082 NF673_RS22380 WP_065615666.1 5068355..5069227(+) (pilD) [Pseudomonas moraviensis strain OTU5MASSA1]
MPIDELFAVYPLAFVLTALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPIETPAPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLVLRGCCSACSAPISRRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLSDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQVLPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=701082 NF673_RS22380 WP_065615666.1 5068355..5069227(+) (pilD) [Pseudomonas moraviensis strain OTU5MASSA1]
ATGCCTATCGACGAACTGTTTGCCGTGTACCCGCTGGCGTTTGTGCTCACCGCGCTGCTGCTTGGTCTGGTGGTCGGCAG
CTTCCTCAACGTGGTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCATTGAAACACCTGCGCCGACCTACAACCTGATGCTGCCGCATTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAATATTCCGCTGCTCAGTTATCTGGTGCTGCGCGGCTGCTGCTCGGCCTGCTCGGCACCGATCAGCAGACG
TTACCCGCTGACCGAGCTGGCCTGCGGCCTGCTCTCGGCCTTCATCGCCTGGCACCTTGGCTTCGGCTGGCCGGCGGGTC
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGCCTGATCGACTGCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTATTCGTGCCGTTGTCCGATGCGCTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTACTCACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGCTGCTGGCCTTGCTCGGTGCATGGGGTGGCTGGCAGGTTCTGCCGCTGACCATTCTGTTGTCATCGCTGGTGGGG
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCGTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.577	97.931	0.534
pilD	Vibrio campbellii strain DS40M4	52.632	98.276	0.517
pilD	Neisseria gonorrhoeae MS11	46.341	98.966	0.459
pilD	Acinetobacter baumannii D1279779	47.445	94.483	0.448
pilD	Acinetobacter nosocomialis M2	47.445	94.483	0.448