Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF673_RS19235 Genome accession   NZ_CP099609
Coordinates   4362245..4362880 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas moraviensis strain OTU5MASSA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4357245..4367880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF673_RS19200 (NF673_19200) - 4357638..4358108 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  NF673_RS19205 (NF673_19205) murB 4358359..4359378 (-) 1020 WP_227972839.1 UDP-N-acetylmuramate dehydrogenase -
  NF673_RS19210 (NF673_19210) - 4359375..4359839 (-) 465 WP_064361450.1 low molecular weight protein-tyrosine-phosphatase -
  NF673_RS19215 (NF673_19215) kdsB 4359839..4360603 (-) 765 WP_123418958.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF673_RS19220 (NF673_19220) - 4360600..4360785 (-) 186 WP_003179363.1 Trm112 family protein -
  NF673_RS19225 (NF673_19225) lpxK 4360810..4361820 (-) 1011 WP_252880632.1 tetraacyldisaccharide 4'-kinase -
  NF673_RS19230 (NF673_19230) - 4361820..4362248 (-) 429 WP_042610688.1 biopolymer transporter ExbD -
  NF673_RS19235 (NF673_19235) exbB 4362245..4362880 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF673_RS19240 (NF673_19240) comA 4362982..4365216 (-) 2235 WP_252880633.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF673_RS19245 (NF673_19245) - 4365353..4365871 (+) 519 WP_042610686.1 DUF2062 domain-containing protein -
  NF673_RS19250 (NF673_19250) - 4366015..4366794 (-) 780 WP_039760202.1 ABC transporter permease -
  NF673_RS19255 (NF673_19255) - 4366791..4367723 (-) 933 WP_042610685.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=701076 NF673_RS19235 WP_007908216.1 4362245..4362880(-) (exbB) [Pseudomonas moraviensis strain OTU5MASSA1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=701076 NF673_RS19235 WP_007908216.1 4362245..4362880(-) (exbB) [Pseudomonas moraviensis strain OTU5MASSA1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCGGCCATGGCGATCGTTGC
CGAACGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAGCTCGAACGCTATGT
CAACGCGTTGGGCACCATCGCCGCGATGTCGCCGTTGCTCGGTCTGCTCGGCACTGTGCTCGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCATCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848