Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP24_RS20130 Genome accession   NZ_CP115273
Coordinates   4319897..4320493 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4314897..4325493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP24_RS20120 (PCP24_20110) - 4316177..4318648 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PCP24_RS20125 (PCP24_20115) pilM 4318833..4319897 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP24_RS20130 (PCP24_20120) pilN 4319897..4320493 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP24_RS20135 (PCP24_20125) pilO 4320490..4321113 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP24_RS20140 (PCP24_20130) comL/pilP 4321110..4321634 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP24_RS20145 (PCP24_20135) pilQ 4321688..4323832 (+) 2145 WP_023465329.1 type 4a pilus secretin PilQ Machinery gene
  PCP24_RS20150 (PCP24_20140) aroK 4323844..4324362 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=700986 PCP24_RS20130 WP_003095839.1 4319897..4320493(+) (pilN) [Pseudomonas aeruginosa strain F016]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=700986 PCP24_RS20130 WP_003095839.1 4319897..4320493(+) (pilN) [Pseudomonas aeruginosa strain F016]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369