Detailed information NTG0700872

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NF675_RS19005
• Genome accession: NZ_CP099596
• Coordinates: 4347745..4349979 (-)
• Length: 744 a.a.
• NCBI ID: WP_252878708.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain OTU6BAGNBB1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4342745..4354979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF675_RS18970 (NF675_18970)	murB	4343123..4344142 (-)	1020	WP_252878706.1	UDP-N-acetylmuramate dehydrogenase	-
NF675_RS18975 (NF675_18975)	-	4344139..4344603 (-)	465	WP_095181615.1	low molecular weight protein-tyrosine-phosphatase	-
NF675_RS18980 (NF675_18980)	kdsB	4344603..4345367 (-)	765	WP_041479456.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NF675_RS18985 (NF675_18985)	-	4345364..4345549 (-)	186	WP_003179363.1	Trm112 family protein	-
NF675_RS18990 (NF675_18990)	lpxK	4345573..4346583 (-)	1011	WP_252878707.1	tetraacyldisaccharide 4'-kinase	-
NF675_RS18995 (NF675_18995)	-	4346583..4347011 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
NF675_RS19000 (NF675_19000)	exbB	4347008..4347643 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NF675_RS19005 (NF675_19005)	comA	4347745..4349979 (-)	2235	WP_252878708.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NF675_RS19010 (NF675_19010)	-	4350116..4350634 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
NF675_RS19015 (NF675_19015)	-	4350774..4351553 (-)	780	WP_056788203.1	ABC transporter permease	-
NF675_RS19020 (NF675_19020)	-	4351550..4352482 (-)	933	WP_041479460.1	ABC transporter ATP-binding protein	-
NF675_RS19025 (NF675_19025)	-	4352616..4353239 (-)	624	WP_095181610.1	glutathione S-transferase	-
NF675_RS19030 (NF675_19030)	-	4353283..4353942 (-)	660	WP_252878709.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82023.35 Da
• Isoelectric Point: 9.7828

>NTDB_id=700872 NF675_RS19005 WP_252878708.1 4347745..4349979(-) (comA) [Pseudomonas siliginis strain OTU6BAGNBB1]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPSGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPCACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLI
WPPQERIEERRADVWQLDVGQGLAILVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGLNVRRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHCNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=700872 NF675_RS19005 WP_252878708.1 4347745..4349979(-) (comA) [Pseudomonas siliginis strain OTU6BAGNBB1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTGGACGGCGAAACCCGTTGGCTTGAAGGG
CGCGTGGTCGGCTTACCGCAGCACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGACTGGCGGTGAAGTTGA
AGCGCCCGAGTGGCCTACTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTCGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCAGCGCTGGTGCTCGGTGATGGCTCTGGGCTCAGTCGCGAGGATTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATCTCCGGCCAGCACATCGGTTTGCTCGCCGCAGTGATGTATCTGCTG
GTTGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCCTGGTTGCCGTGCGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGCTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTTGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGCCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATTGTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCAATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCGGATGTCTGGCAACTCGACGTCGGCCAAGGCTTGGCCATCCTTGT
TCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTATTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCGCCGCGTGGTCAGCGGCGATCCGCCGAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCGAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCATC
GATGGCTCTGCTCAAAGCCTTGCAGCCCGAAGCGGTACTGATCTCCCGTGGCCACTGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGTGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.421	96.64	0.613
comA	Ralstonia pseudosolanacearum GMI1000	36.154	100	0.379