Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SA58113_RS02560 Genome accession   NZ_AP018562
Coordinates   539110..539667 (+) Length   185 a.a.
NCBI ID   WP_369821465.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain 58113     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 534110..544667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA58113_RS02535 (SA58113_0484) cysE 535311..535958 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  SA58113_RS02540 (SA58113_0485) cysS 535942..537342 (+) 1401 WP_031787937.1 cysteine--tRNA ligase -
  SA58113_RS02545 (SA58113_0486) - 537335..537739 (+) 405 WP_031787938.1 Mini-ribonuclease 3 -
  SA58113_RS02550 (SA58113_0487) rlmB 537747..538493 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SA58113_RS02555 (SA58113_0488) - 538493..539017 (+) 525 WP_000664733.1 NYN domain-containing protein -
  SA58113_RS02560 (SA58113_0489) sigH 539110..539667 (+) 558 WP_369821465.1 sigma-70 family RNA polymerase sigma factor Regulator
  SA58113_RS02565 rpmG 539783..539926 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  SA58113_RS02570 (SA58113_0490) secE 539982..540164 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SA58113_RS02575 (SA58113_0491) nusG 540177..540725 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  SA58113_RS02580 (SA58113_0492) rplK 540906..541328 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SA58113_RS02585 (SA58113_0493) rplA 541536..542228 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SA58113_RS02595 (SA58113_0494) rplJ 542500..543000 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  SA58113_RS02600 (SA58113_0495) rplL 543044..543412 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SA58113_RS02605 (SA58113_0496) - 543600..544208 (+) 609 WP_031787940.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 22544.44 Da        Isoelectric Point: 9.6758

>NTDB_id=70078 SA58113_RS02560 WP_369821465.1 539110..539667(+) (sigH) [Staphylococcus argenteus strain 58113]
MSVHNNVKKHSNIVDENEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQCLITS
VKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREIAQLM
NVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=70078 SA58113_RS02560 WP_369821465.1 539110..539667(+) (sigH) [Staphylococcus argenteus strain 58113]
ATATCAGTGCATAATAATGTTAAAAAACACAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAATAACAGATTTGAA
ACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAGAGATACTAATAA
AGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGTTTAATCACTTCA
GTTAAATACGATTACCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATATAAAGTTATATA
TCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGATTTGTCAATTTA
AATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATTGCCCAATTGATG
AATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAAAATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(22-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.022

99.459

0.686
  sigH Staphylococcus aureus MW2

67.935

99.459

0.676

Multiple sequence alignment