Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NG836_RS11185 Genome accession   NZ_CP099575
Coordinates   2494860..2497076 (+) Length   738 a.a.
NCBI ID   WP_252827108.1    Uniprot ID   -
Organism   Pseudomonas kermanshahensis strain F8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2489860..2502076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG836_RS11165 (NG836_11165) - 2491743..2492366 (+) 624 WP_099453294.1 glutathione S-transferase -
  NG836_RS11170 (NG836_11170) - 2492500..2493432 (+) 933 WP_252827106.1 ABC transporter ATP-binding protein -
  NG836_RS11175 (NG836_11175) - 2493429..2494208 (+) 780 WP_016500910.1 ABC transporter permease -
  NG836_RS11180 (NG836_11180) - 2494092..2494718 (-) 627 WP_252827107.1 DUF2062 domain-containing protein -
  NG836_RS11185 (NG836_11185) comA 2494860..2497076 (+) 2217 WP_252827108.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NG836_RS11190 (NG836_11190) exbB 2497235..2497870 (+) 636 WP_027596066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NG836_RS11195 (NG836_11195) - 2497867..2498301 (+) 435 WP_027596067.1 ExbD/TolR family protein -
  NG836_RS11200 (NG836_11200) lpxK 2498301..2499311 (+) 1011 WP_252827109.1 tetraacyldisaccharide 4'-kinase -
  NG836_RS11205 (NG836_11205) - 2499355..2499540 (+) 186 WP_003247142.1 Trm112 family protein -
  NG836_RS11210 (NG836_11210) kdsB 2499537..2500301 (+) 765 WP_099453299.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NG836_RS11215 (NG836_11215) - 2500301..2500765 (+) 465 WP_252827110.1 low molecular weight protein-tyrosine-phosphatase -
  NG836_RS11220 (NG836_11220) murB 2500762..2501781 (+) 1020 WP_252827111.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79246.95 Da        Isoelectric Point: 9.7508

>NTDB_id=700755 NG836_RS11185 WP_252827108.1 2494860..2497076(+) (comA) [Pseudomonas kermanshahensis strain F8]
MRTGMFALALGLLCLGFLPVLPSVGWLLLLLVGAVACLFTRFWPVGCFLLGLCWACGSAQRALDDRLAPELDGRTLWLEG
KVVGLPSRTAQGVRFELEQPYSRRAELPRRLQLSWFDGPPVRAGEQWRLAVALQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQVLSAVAGSWRDELRQRLLAVEANGRQAVLVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACGLAMAGALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPVAGGGEALLWLAGGLLEVLFRVLALAASWRPAWVPPALPLWAWSVVCLGALLVLLPRGVPLRGLGGLMLLALW
VPRASVPLGQVEVWQLDVGQGLAVLLRTRNHSLLYDAGPAKGEYDAGARVVLPTLRKLGVSHLDAMLISHAHADHAGGAP
AIAQGMSVTRVLGGEELEGLGLQPCVTGEQWEWDGVRFSLWHWAEGQSSNDRSCVLLVEAQGERLLLAGDLEAAAERAWL
ASTDTPRIDWLQAPHHGSRSSSIEAFIRATAPRGVLISRGRNNGFGHPHAQVLERYRRHGLAIHDTALEGALRLVLGRQG
DVEGVRGQRRFWREAGSG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=700755 NG836_RS11185 WP_252827108.1 2494860..2497076(+) (comA) [Pseudomonas kermanshahensis strain F8]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGCTCTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGATGGCT
ACTTCTGCTGTTAGTCGGCGCTGTCGCCTGCCTGTTCACGCGGTTTTGGCCAGTGGGCTGTTTTCTGTTGGGCCTGTGCT
GGGCGTGCGGGTCGGCCCAGCGAGCGCTAGATGACCGACTCGCGCCTGAACTGGATGGCCGCACGTTATGGCTGGAGGGC
AAGGTTGTCGGCCTGCCGAGCCGCACCGCGCAAGGCGTGCGCTTCGAGCTGGAGCAACCCTACTCACGGCGTGCCGAACT
GCCGCGGCGCCTGCAACTGAGCTGGTTCGACGGGCCGCCGGTGCGTGCAGGCGAGCAGTGGCGCTTGGCAGTGGCCCTGC
AGCGGCCTGCCGGGCTGCTCAACCCCCATGGGCCTGATCGAGAGGCACAATTGCTGGCACGGCGGGTGGGGGCTACTGGC
ACGGTCAAGGCCGGGCAGGTGTTGAGCGCTGTAGCGGGCAGCTGGCGAGACGAACTGCGGCAACGGTTGTTGGCGGTCGA
GGCCAATGGCCGGCAAGCGGTGTTGGTGGCCTTGGTGTTGGGCGACGGTGCGGGCCTGGCCCGCGAGGACTGGCAGACGC
TGCAGGCCACGGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGGTGGCGGGTTTGCTCTATGGCCTG
GTTGCCGGGTTGGCACGTTGGGGCCTGTGGCCCGCGCGGCTGCCCTGGCTGCCCTCGGCTTGCGGCCTGGCGATGGCAGG
CGCGCTGGCCTACGGCTGGCTTGCCGGTGGCGGCGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCAGTGGTGTTGCTTT
GGCGTCTGCGCTTTCGTCACCTTGGCGCGACGCTGCCGTTGCTGCTGGCGCTGGTCGCCGTGCTGTTGTTCGAACCCTTG
GCGGCGCTGTTGCCGGGGTTCTGGCTGTCGTTTGCCGCTGTGGCGACCTTGATCTACTGCTTCAGTGCCCGCCTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCCACTGGCT
TGCCGGTGAGCCTGAGTGCGCCCCTGGCCAACTTGCTGGCGGTGCCGTGGGTCAGCCTTGCGGTGTTGCCGTTGGCTTTG
CTGGGGACGCTGCTGTTGCCCGTGGCGGGTGGAGGAGAGGCTTTGCTGTGGCTGGCCGGGGGCTTGCTGGAGGTGCTGTT
CAGGGTCTTGGCCCTGGCCGCGAGCTGGCGCCCAGCGTGGGTGCCGCCGGCCTTGCCGCTGTGGGCCTGGTCAGTGGTGT
GCCTGGGCGCGCTGCTGGTGCTGCTACCCCGTGGCGTGCCCTTGCGAGGGTTGGGCGGGCTCATGCTGCTGGCGTTATGG
GTGCCTAGGGCGTCGGTGCCCTTGGGGCAGGTGGAGGTCTGGCAGTTGGACGTCGGCCAGGGGCTGGCGGTGCTACTGCG
TACCCGCAATCACAGCCTGCTCTACGATGCCGGGCCAGCAAAAGGGGAGTACGACGCGGGGGCGCGTGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGCGTAAGCCACTTGGATGCGATGCTGATCAGCCACGCCCATGCCGACCATGCTGGGGGCGCGCCG
GCCATTGCGCAGGGCATGTCTGTCACGCGGGTGCTCGGTGGCGAGGAGTTAGAGGGCCTTGGGCTGCAGCCGTGTGTCAC
CGGTGAGCAATGGGAGTGGGATGGCGTGCGTTTTTCCCTCTGGCATTGGGCTGAAGGGCAGAGCAGTAACGACCGCTCAT
GCGTGCTGCTGGTCGAGGCGCAAGGGGAGCGCTTGCTGTTGGCCGGCGACCTGGAGGCCGCAGCTGAACGGGCCTGGCTG
GCGTCTACTGATACACCCCGCATCGACTGGCTGCAGGCCCCGCACCATGGCAGTCGCAGCTCGTCCATCGAGGCATTCAT
CCGCGCCACGGCGCCACGTGGAGTGCTGATATCGCGGGGGCGCAACAATGGTTTTGGTCATCCGCATGCCCAGGTGCTCG
AGCGCTATCGGCGGCATGGGCTGGCGATTCATGATACGGCGCTGGAGGGTGCGTTGCGCTTGGTGCTGGGGCGTCAGGGT
GACGTTGAGGGTGTGCGGGGGCAGCGGCGCTTCTGGCGTGAAGCGGGCAGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-675)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.425

0.583
  comA Ralstonia pseudosolanacearum GMI1000

36.178

100

0.385