Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NGM19_RS14050 Genome accession   NZ_CP099548
Coordinates   2942582..2943241 (+) Length   219 a.a.
NCBI ID   WP_004909409.1    Uniprot ID   S7WH53
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2937582..2948241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS14035 (NGM19_14035) - 2938601..2939581 (-) 981 WP_042892091.1 putative solute-binding protein -
  NGM19_RS14040 (NGM19_14040) - 2939706..2940524 (-) 819 WP_042892092.1 NAD-dependent epimerase/dehydratase family protein -
  NGM19_RS14045 (NGM19_14045) recG 2940544..2942589 (+) 2046 WP_004909406.1 ATP-dependent DNA helicase RecG -
  NGM19_RS14050 (NGM19_14050) comF 2942582..2943241 (+) 660 WP_004909409.1 phosphoribosyltransferase family protein Machinery gene
  NGM19_RS14055 (NGM19_14055) - 2943231..2943617 (-) 387 WP_004909413.1 NUDIX domain-containing protein -
  NGM19_RS14060 (NGM19_14060) - 2943627..2944211 (-) 585 WP_004951749.1 TIGR00730 family Rossman fold protein -
  NGM19_RS14065 (NGM19_14065) - 2944362..2945375 (+) 1014 WP_004964376.1 magnesium and cobalt transport protein CorA -
  NGM19_RS14070 (NGM19_14070) - 2945589..2945903 (+) 315 WP_228272799.1 hypothetical protein -
  NGM19_RS14075 (NGM19_14075) - 2945958..2946245 (-) 288 WP_004964385.1 STAS domain-containing protein -
  NGM19_RS14080 (NGM19_14080) - 2946257..2946889 (-) 633 WP_004909421.1 ABC transporter substrate-binding protein -
  NGM19_RS14085 (NGM19_14085) - 2946909..2947583 (-) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24943.12 Da        Isoelectric Point: 8.8068

>NTDB_id=700618 NGM19_RS14050 WP_004909409.1 2942582..2943241(+) (comF) [Acinetobacter junii strain AJ6079]
MSKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILVACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=700618 NGM19_RS14050 WP_004909409.1 2942582..2943241(+) (comF) [Acinetobacter junii strain AJ6079]
ATGTCTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTGTTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGATTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WH53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.636

95.434

0.607
  comF Acinetobacter baumannii D1279779

63.158

95.434

0.603